Construct: ORF ccsbBroadEn_13631
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005358.1_s300c1, BRDN0000456075
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC375010 (375010)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100874392 | ANKRD20A12P | ankyrin repeat domain 20 fa... | NR_046228.1 | 9% | 1_160del;225T>C;320_1744del | |
| 2 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XM_005272525.4 | 5.9% | 4.8% | (many diffs) |
| 3 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | XM_024447553.1 | 5.9% | 4.8% | (many diffs) |
| 4 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | NM_001012419.2 | 5.9% | 4.8% | (many diffs) |
| 5 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | NM_001012421.1 | 5.9% | 4.8% | (many diffs) |
| 6 | human | 728747 | ANKRD20A4 | ankyrin repeat domain 20 fa... | NM_001098805.1 | 5.8% | 4.8% | (many diffs) |
| 7 | human | 84210 | ANKRD20A1 | ankyrin repeat domain 20 fa... | NM_032250.3 | 5.8% | 4.7% | (many diffs) |
| 8 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | XM_011517878.2 | 5.8% | 4.8% | (many diffs) |
| 9 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XM_011543860.3 | 5.8% | 4.8% | (many diffs) |
| 10 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | XM_011517877.3 | 5.8% | 4.7% | (many diffs) |
| 11 | human | 102723552 | ANKRD20A21P | ankyrin repeat domain 20 fa... | XR_002958558.1 | 4.9% | (many diffs) | |
| 12 | human | 284232 | ANKRD20A9P | ankyrin repeat domain 20 fa... | NR_138091.1 | 4.5% | (many diffs) | |
| 13 | human | 440482 | ANKRD20A5P | ankyrin repeat domain 20 fa... | NR_040113.1 | 4% | (many diffs) | |
| 14 | human | 729171 | ANKRD20A8P | ankyrin repeat domain 20 fa... | NR_003366.2 | 3.9% | (many diffs) | |
| 15 | human | 105379426 | LOC105379426 | ankyrin repeat domain-conta... | XR_001756105.1 | 3.8% | (many diffs) | |
| 16 | human | 110006327 | ANKRD20A4-ANKRD20A20P | ANKRD20A4-ANKRD20A20P readt... | NR_146419.1 | 3.3% | (many diffs) | |
| 17 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XR_001746296.2 | 3.1% | (many diffs) | |
| 18 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XR_001746295.2 | 3.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 228
- ORF length:
- 159
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGTTCTGAT ATTTCCGAAG TAGAAGATAA GAATGAGTTT CTTACTGAAC 121 AACTTTCTAA AACGCAAATT AAACTCAATA CCTTAAAAGA TAAGTTCCGT AAGAAAAGAG 181 ATACTCTCAG AAAAAAGTCA TCGGCTTTAG AAACTCTCCA AACGACCTTG CCAACTTTCT 241 TGTACAAAGT TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac