Transcript: Human XR_001756105.1

PREDICTED: Homo sapiens ankyrin repeat domain-containing protein 20A2 (LOC105379426), ncRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LOC105379426 (105379426)
Length:
4053
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001756105.1
NBCI Gene record:
LOC105379426 (105379426)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001756105.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000262908 ATTAGGCACAGAGTCATATTT pLKO_005 3520 3UTR 100% 15.000 7.500 Y ANKRD20A4 n/a
2 TRCN0000167418 GCAGAAGCTAAAGTGAATAAT pLKO.1 2732 3UTR 100% 15.000 7.500 Y ANKRD20A1 n/a
3 TRCN0000167112 CACAGGTCAAAGAAGGAAATA pLKO.1 1723 3UTR 100% 13.200 6.600 Y ANKRD20A1 n/a
4 TRCN0000434616 CATCAGAAAGAGGATCATAAA pLKO_005 2840 3UTR 100% 13.200 6.600 Y ANKRD20A1 n/a
5 TRCN0000128130 CGGTATCAACAAGAGCTTAAT pLKO.1 2306 3UTR 100% 13.200 6.600 Y ANKRD20A2 n/a
6 TRCN0000128553 GCCACATGTTAAGACCATAAT pLKO.1 3593 3UTR 100% 13.200 6.600 Y ANKRD20A2 n/a
7 TRCN0000423507 GGTATCAACAAGAGCTTAATG pLKO_005 2307 3UTR 100% 13.200 6.600 Y ANKRD20A1 n/a
8 TRCN0000262906 TCATCAGAAAGAGGATCATAA pLKO_005 2839 3UTR 100% 13.200 6.600 Y ANKRD20A4 n/a
9 TRCN0000262905 TGTGAAAGGAGCAGTACAAAG pLKO_005 1610 3UTR 100% 10.800 5.400 Y ANKRD20A4 n/a
10 TRCN0000155962 CTGTGAAAGGAGCAGTACAAA pLKO.1 1609 3UTR 100% 5.625 2.813 Y ANKRD20A11P n/a
11 TRCN0000128015 GCTGAGAATACAAGGCTCAAT pLKO.1 2336 3UTR 100% 4.950 2.475 Y ANKRD20A2 n/a
12 TRCN0000136726 GCTGAGAATACAAGGCTCAAT pLKO.1 2336 3UTR 100% 4.950 2.475 Y ANKRD20A3 n/a
13 TRCN0000156881 GCTGTGAAAGGAGCAGTACAA pLKO.1 1608 3UTR 100% 4.950 2.475 Y ANKRD20A11P n/a
14 TRCN0000419116 ATATCCAAAGAGGCTTTATTG pLKO_005 2874 3UTR 100% 13.200 6.600 Y ANKRD20A1 n/a
15 TRCN0000158171 CCTTGAAGCCTAGCACTGAAA pLKO.1 1576 3UTR 100% 4.950 2.475 Y ANKRD20A11P n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001756105.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13631 pDONR223 100% 3.8% None (many diffs) n/a
2 ccsbBroad304_13631 pLX_304 0% 3.8% V5 (many diffs) n/a
3 TRCN0000477773 GCACCGACAGTTTAATGATTATCA pLX_317 100% 3.8% V5 (many diffs) n/a
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