Construct: ORF ccsbBroadEn_13660
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008952.1_s300c1, BRDN0000390804
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AQP7P2 (389756)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 112267859 | LOC112267859 | putative aquaporin-7-like p... | XM_024447732.1 | 52.1% | 35.7% | 153_154insC;202_260del;314_486del |
| 2 | human | 364 | AQP7 | aquaporin 7 | XM_024447539.1 | 44.8% | 30.4% | (many diffs) |
| 3 | human | 100509620 | LOC100509620 | putative aquaporin-7-like p... | XM_017005469.2 | 41% | 27.6% | (many diffs) |
| 4 | human | 100509620 | LOC100509620 | putative aquaporin-7-like p... | XM_017005468.2 | 39.4% | 26.5% | (many diffs) |
| 5 | human | 364 | AQP7 | aquaporin 7 | NM_001318156.1 | 37.5% | 25.6% | (many diffs) |
| 6 | human | 100509620 | LOC100509620 | putative aquaporin-7-like p... | XM_005276965.5 | 36.7% | 24.7% | (many diffs) |
| 7 | human | 100509620 | LOC100509620 | putative aquaporin-7-like p... | XM_006712884.3 | 36.7% | 24.7% | (many diffs) |
| 8 | human | 112267859 | LOC112267859 | putative aquaporin-7-like p... | XM_024447730.1 | 35% | 22.9% | 1_444del;597_598insC;699_723del |
| 9 | human | 364 | AQP7 | aquaporin 7 | XM_017014706.2 | 32.9% | 21.8% | (many diffs) |
| 10 | human | 364 | AQP7 | aquaporin 7 | XM_017014701.1 | 32.4% | 21.7% | (many diffs) |
| 11 | human | 364 | AQP7 | aquaporin 7 | XM_017014702.2 | 32.4% | 21.7% | (many diffs) |
| 12 | human | 364 | AQP7 | aquaporin 7 | XM_017014704.1 | 32.4% | 21.7% | (many diffs) |
| 13 | human | 364 | AQP7 | aquaporin 7 | XM_017014705.2 | 32.4% | 21.7% | (many diffs) |
| 14 | human | 364 | AQP7 | aquaporin 7 | XM_024447537.1 | 32.4% | 21.7% | (many diffs) |
| 15 | human | 364 | AQP7 | aquaporin 7 | XM_024447538.1 | 32.4% | 21.7% | (many diffs) |
| 16 | human | 100509620 | LOC100509620 | putative aquaporin-7-like p... | XM_017005467.1 | 32.4% | 21.9% | (many diffs) |
| 17 | human | 112267859 | LOC112267859 | putative aquaporin-7-like p... | XM_024447731.1 | 30.8% | 20.3% | 1_543del;696_697insC;798_822del |
| 18 | human | 364 | AQP7 | aquaporin 7 | XM_024447535.1 | 29.7% | 20.4% | (many diffs) |
| 19 | human | 364 | AQP7 | aquaporin 7 | XM_024447536.1 | 29.7% | 20.4% | (many diffs) |
| 20 | human | 364 | AQP7 | aquaporin 7 | XM_006716765.3 | 28.5% | 19% | (many diffs) |
| 21 | human | 364 | AQP7 | aquaporin 7 | XM_011517867.2 | 28.5% | 19% | (many diffs) |
| 22 | human | 112267859 | LOC112267859 | putative aquaporin-7-like p... | XM_024447729.1 | 27.2% | 18.8% | (many diffs) |
| 23 | human | 364 | AQP7 | aquaporin 7 | NM_001318157.1 | 26% | 17.5% | (many diffs) |
| 24 | human | 364 | AQP7 | aquaporin 7 | NM_001318158.1 | 25.9% | 17.4% | (many diffs) |
| 25 | human | 364 | AQP7 | aquaporin 7 | XM_017014700.1 | 23.8% | 15.9% | (many diffs) |
| 26 | human | 364 | AQP7 | aquaporin 7 | NM_001170.3 | 23.7% | 15.9% | (many diffs) |
| 27 | human | 364 | AQP7 | aquaporin 7 | XM_005251453.3 | 23.7% | 15.9% | (many diffs) |
| 28 | human | 364 | AQP7 | aquaporin 7 | XM_011517866.3 | 23.7% | 15.9% | (many diffs) |
| 29 | human | 100509620 | LOC100509620 | putative aquaporin-7-like p... | XM_006712887.3 | 21.4% | 14.5% | (many diffs) |
| 30 | human | 364 | AQP7 | aquaporin 7 | NR_134513.1 | 14.8% | (many diffs) | |
| 31 | human | 364 | AQP7 | aquaporin 7 | NR_134514.1 | 13.7% | (many diffs) | |
| 32 | human | 364 | AQP7 | aquaporin 7 | NR_134515.1 | 12.6% | (many diffs) | |
| 33 | human | 375719 | AQP7P1 | aquaporin 7 pseudogene 1 | NR_002817.2 | 8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 321
- ORF length:
- 255
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT CCAGCTGTGT CTCTTCGCCA TCGTGGACCA GGAGAACAAC CCAGCACTGC 121 CAGGAACACA CGCACTGGTG ATAGGCATCC TCGTGGTCAT CATCAGGGTG TACCATGGCA 181 TGAACACAGG ATATGCCATC AATCCGTCCC GGGACCTGCC CCCCCCGCAT CTTCACCTTC 241 ATTGCTGGTT GGGGCAAACT GGTCTTCAGG TGGCATCATC TACCTGGTCT TCATTGGCTC 301 CACCATCCCA CGGGAGCCCC TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 361 attgcttatc aatttgttgc aacgaac