Construct: ORF ccsbBroadEn_13692

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004887.1_s300c1, BRDN0000387237
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBC1D3P2 (440452)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 101060376 TBC1D3L TBC1 domain family member 3L XM_006722247.2 75.8% 68.7% (many diffs)
2 human 101060389 TBC1D3D TBC1 domain family member 3D XM_006722253.2 75.8% 68.7% (many diffs)
3 human 101060351 TBC1D3K TBC1 domain family member 3K XM_011524174.1 75.8% 68.7% (many diffs)
4 human 414060 TBC1D3C TBC1 domain family member 3C XM_006721908.2 75.7% 68.7% (many diffs)
5 human 102724862 TBC1D3I TBC1 domain family member 3I XM_011524185.2 75.7% 68.5% (many diffs)
6 human 729877 TBC1D3H TBC1 domain family member 3H XM_011525176.2 75.6% 68.3% (many diffs)
7 human 84218 TBC1D3F TBC1 domain family member 3F NM_032258.5 60.4% 52.6% (many diffs)
8 human 101060376 TBC1D3L TBC1 domain family member 3L NM_001291459.2 60.3% 52% (many diffs)
9 human 101060376 TBC1D3L TBC1 domain family member 3L NM_001369500.1 60.3% 52% (many diffs)
10 human 101060351 TBC1D3K TBC1 domain family member 3K NM_001291464.1 60.3% 48.4% (many diffs)
11 human 101060389 TBC1D3D TBC1 domain family member 3D NM_001291465.1 60.3% 48.4% (many diffs)
12 human 101060351 TBC1D3K TBC1 domain family member 3K XM_006722237.2 60.3% 48.4% (many diffs)
13 human 414060 TBC1D3C TBC1 domain family member 3C NM_001001418.6 60.3% 48.4% (many diffs)
14 human 729873 TBC1D3 TBC1 domain family member 3 NM_001123391.3 60.3% 48.4% (many diffs)
15 human 101060321 TBC1D3G TBC1 domain family member 3G NM_001291462.2 60.3% 48.2% (many diffs)
16 human 102724862 TBC1D3I TBC1 domain family member 3I NM_001291463.1 60.3% 48.2% (many diffs)
17 human 102724862 TBC1D3I TBC1 domain family member 3I XM_006722224.3 60.3% 48.2% (many diffs)
18 human 414059 TBC1D3B TBC1 domain family member 3B NM_001001417.6 60.3% 48% (many diffs)
19 human 414060 TBC1D3C TBC1 domain family member 3C XM_017030257.1 60.3% 48% (many diffs)
20 human 729877 TBC1D3H TBC1 domain family member 3H NM_001123392.3 60.2% 48% (many diffs)
21 human 729877 TBC1D3H TBC1 domain family member 3H XM_006722055.2 60.2% 48% (many diffs)
22 human 102723859 TBC1D3E TBC1 domain family member 3E NM_001291466.1 60.1% 48% (many diffs)
23 human 102723859 TBC1D3E TBC1 domain family member 3E XM_006722254.2 60.1% 48% (many diffs)
24 human 101060376 TBC1D3L TBC1 domain family member 3L XM_006722244.2 57.8% 50% (many diffs)
25 human 101060389 TBC1D3D TBC1 domain family member 3D XM_006722250.2 57.8% 50% (many diffs)
26 human 101060351 TBC1D3K TBC1 domain family member 3K XM_011524173.1 57.8% 50% (many diffs)
27 human 414060 TBC1D3C TBC1 domain family member 3C XM_017024646.1 57.8% 50% (many diffs)
28 human 102724862 TBC1D3I TBC1 domain family member 3I XM_011524184.2 57.8% 49.8% (many diffs)
29 human 414060 TBC1D3C TBC1 domain family member 3C XM_011547459.2 57.8% 49.6% (many diffs)
30 human 729877 TBC1D3H TBC1 domain family member 3H XM_011525175.2 57.7% 49.6% (many diffs)
31 human 101060376 TBC1D3L TBC1 domain family member 3L NM_001369501.1 56.6% 48.1% (many diffs)
32 human 101060351 TBC1D3K TBC1 domain family member 3K XM_006722239.2 56.6% 44.7% (many diffs)
33 human 101060389 TBC1D3D TBC1 domain family member 3D XM_006722252.3 56.6% 44.7% (many diffs)
34 human 414060 TBC1D3C TBC1 domain family member 3C XM_006721907.3 56.5% 44.7% (many diffs)
35 human 102724862 TBC1D3I TBC1 domain family member 3I XM_006722226.3 56.5% 44.5% (many diffs)
36 human 729877 TBC1D3H TBC1 domain family member 3H XM_006722056.2 56.4% 44.4% (many diffs)
37 human 100510707 TBC1D3J TBC1 domain family member 3J XM_024450524.1 54.8% 41.7% (many diffs)
38 human 101060376 TBC1D3L TBC1 domain family member 3L NM_001369499.1 54.4% 46.6% (many diffs)
39 human 101060376 TBC1D3L TBC1 domain family member 3L XM_011524175.2 54.4% 46.6% (many diffs)
40 human 101060351 TBC1D3K TBC1 domain family member 3K XM_006722235.2 54.4% 43.6% (many diffs)
41 human 101060351 TBC1D3K TBC1 domain family member 3K XM_006722236.1 54.4% 43.6% (many diffs)
42 human 101060389 TBC1D3D TBC1 domain family member 3D XM_006722248.2 54.4% 43.6% (many diffs)
43 human 101060389 TBC1D3D TBC1 domain family member 3D XM_011524176.2 54.4% 43.6% (many diffs)
44 human 414060 TBC1D3C TBC1 domain family member 3C XM_006721904.2 54.4% 43.6% (many diffs)
45 human 414060 TBC1D3C TBC1 domain family member 3C XM_011524814.2 54.4% 43.6% (many diffs)
46 human 101060321 TBC1D3G TBC1 domain family member 3G XM_005276914.3 54.4% 43.4% (many diffs)
47 human 102724862 TBC1D3I TBC1 domain family member 3I XM_006722223.3 54.4% 43.4% (many diffs)
48 human 414059 TBC1D3B TBC1 domain family member 3B XM_005257980.4 54.4% 43.3% (many diffs)
49 human 414060 TBC1D3C TBC1 domain family member 3C XM_005257981.3 54.4% 43.3% (many diffs)
50 human 729877 TBC1D3H TBC1 domain family member 3H XM_011525172.2 54.3% 43.3% (many diffs)
51 human 729877 TBC1D3H TBC1 domain family member 3H XM_011525173.2 54.3% 43.3% (many diffs)
52 human 101060389 TBC1D3D TBC1 domain family member 3D XM_017024010.2 52.1% 50.3% (many diffs)
53 human 101060376 TBC1D3L TBC1 domain family member 3L XM_006722243.2 51% 43.2% (many diffs)
54 human 101060389 TBC1D3D TBC1 domain family member 3D XM_006722249.2 51% 40.3% (many diffs)
55 human 101060351 TBC1D3K TBC1 domain family member 3K XM_011524172.1 51% 40.3% (many diffs)
56 human 414060 TBC1D3C TBC1 domain family member 3C XM_006721905.2 51% 40.3% (many diffs)
57 human 102724862 TBC1D3I TBC1 domain family member 3I XM_011524183.2 51% 40.1% (many diffs)
58 human 729877 TBC1D3H TBC1 domain family member 3H XM_011525174.2 50.9% 40% (many diffs)
59 human 100510707 TBC1D3J TBC1 domain family member 3J NM_001355571.1 49.5% 38.9% (many diffs)
60 human 440452 TBC1D3P2 TBC1 domain family member 3... NR_027486.1 45.9% (many diffs)
61 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524059.2 38.3% 33.2% (many diffs)
62 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524058.2 29.2% 25.3% (many diffs)
63 human 9098 USP6 ubiquitin specific peptidase 6 NM_001304284.2 21.4% 18.6% (many diffs)
64 human 9098 USP6 ubiquitin specific peptidase 6 NM_004505.4 21.4% 18.6% (many diffs)
65 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524050.1 21.4% 18.6% (many diffs)
66 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524051.2 21.4% 18.6% (many diffs)
67 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524052.2 21.4% 18.6% (many diffs)
68 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524053.2 21.4% 18.6% (many diffs)
69 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524054.2 21.4% 18.6% (many diffs)
70 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524055.2 21.4% 18.6% (many diffs)
71 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524056.2 21.4% 18.6% (many diffs)
72 human 9098 USP6 ubiquitin specific peptidase 6 XM_017025290.1 21.4% 18.6% (many diffs)
73 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524057.2 20.1% 17.4% (many diffs)
74 human 101060376 TBC1D3L TBC1 domain family member 3L NM_001369503.1 16.8% 10.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1104
ORF length:
1038
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CGTGGTAGAG GTCGTGGGTA GTTGGTGGGC ACAAGAGCGA GAGGACATCA
121TTATGAAATA CGAAAAGGGA CACCGAGCTG GGCTGCCAGA GGACAAGGGG CCTAAGCCTT
181TTGGAAGCTA CAACAACAAC ATCGATCACT TTGGGATGCA GCATGAGACG GAGCTGCCTC
241CTCTGACTGC GCGGGAGGTG AAGCAAATTC GGCGGGAGAT CAGCCGAAAG AGCAAGTGGG
301TGAAAATGCT GGGAGAATGG GACACCTACA AAAACAGCAG AAAGCTCATA GATCGAGCGT
361ACCAGGGAAT TCCCATGAAC ATCCGGGGCC CGATGTGGTC AGTCCTCCTG AACATTGAGG
421AAATCAAGTT GAAAAACCCC GGAAGATACC AGATCATGAA GGAGAAGGGC AAGAGGTCAT
481CTGAACACAT CCAGCAGATG GACCTGGACG TAAGTGGGAC ATTAAGGAGG CATATATTCT
541TCAGGGATCG ATACGGAACC AAGCAGCGGG AACTACTTTA CATCCTCCTG GCGTATGAGG
601AGTATAACCC GGAGGTGGGC TACTGCAGGG ACCTGAGCCA CATCGCCGCC TTGTTCCTCC
661TTTATCTTCC TGAGGAGGAT GCATTCTGGG CACTGGTGCA GCTGCTGGCC AGTGAGAGGC
721ACTCCCTGCA GGGATTTCAC AGCCCAAATG GCGGGACCGT CCAGGGGCTC CAAGACCAAC
781AGGAGCATGT GGTAGCCACG TCACTACCCA AGACCATGTG GCATCAGGAC AAGAAAGATC
841TATGTGGGCA GTGTTCGTCC TTAGGCTGCC TCATCCGGAT ATTGATTGAT GGGATCTCTC
901TCGGGCTCAC CCTGCGCCTC TGGGACGTGT ATCTGGTAGA AGGCGAACAG GCGTTCATGC
961TGATAACAAA ATCGCCTTTA AGGTTCAGCA GAAGCGCCTC ACGAAGACGT CCAGGTGTGG
1021CCCGTGGGCA CGTTTTTGGA ACCGGTTCGT TGATGCCTGG GCCAGGGATG ATGACACTGT
1081GCTCAAGCAT CTTAGGGCCT CTATGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1141agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)