Construct: ORF ccsbBroadEn_13692
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004887.1_s300c1, BRDN0000387237
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBC1D3P2 (440452)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_006722247.2 | 75.8% | 68.7% | (many diffs) |
| 2 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722253.2 | 75.8% | 68.7% | (many diffs) |
| 3 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_011524174.1 | 75.8% | 68.7% | (many diffs) |
| 4 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721908.2 | 75.7% | 68.7% | (many diffs) |
| 5 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_011524185.2 | 75.7% | 68.5% | (many diffs) |
| 6 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525176.2 | 75.6% | 68.3% | (many diffs) |
| 7 | human | 84218 | TBC1D3F | TBC1 domain family member 3F | NM_032258.5 | 60.4% | 52.6% | (many diffs) |
| 8 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001291459.2 | 60.3% | 52% | (many diffs) |
| 9 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001369500.1 | 60.3% | 52% | (many diffs) |
| 10 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | NM_001291464.1 | 60.3% | 48.4% | (many diffs) |
| 11 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | NM_001291465.1 | 60.3% | 48.4% | (many diffs) |
| 12 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722237.2 | 60.3% | 48.4% | (many diffs) |
| 13 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | NM_001001418.6 | 60.3% | 48.4% | (many diffs) |
| 14 | human | 729873 | TBC1D3 | TBC1 domain family member 3 | NM_001123391.3 | 60.3% | 48.4% | (many diffs) |
| 15 | human | 101060321 | TBC1D3G | TBC1 domain family member 3G | NM_001291462.2 | 60.3% | 48.2% | (many diffs) |
| 16 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | NM_001291463.1 | 60.3% | 48.2% | (many diffs) |
| 17 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_006722224.3 | 60.3% | 48.2% | (many diffs) |
| 18 | human | 414059 | TBC1D3B | TBC1 domain family member 3B | NM_001001417.6 | 60.3% | 48% | (many diffs) |
| 19 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_017030257.1 | 60.3% | 48% | (many diffs) |
| 20 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | NM_001123392.3 | 60.2% | 48% | (many diffs) |
| 21 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_006722055.2 | 60.2% | 48% | (many diffs) |
| 22 | human | 102723859 | TBC1D3E | TBC1 domain family member 3E | NM_001291466.1 | 60.1% | 48% | (many diffs) |
| 23 | human | 102723859 | TBC1D3E | TBC1 domain family member 3E | XM_006722254.2 | 60.1% | 48% | (many diffs) |
| 24 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_006722244.2 | 57.8% | 50% | (many diffs) |
| 25 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722250.2 | 57.8% | 50% | (many diffs) |
| 26 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_011524173.1 | 57.8% | 50% | (many diffs) |
| 27 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_017024646.1 | 57.8% | 50% | (many diffs) |
| 28 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_011524184.2 | 57.8% | 49.8% | (many diffs) |
| 29 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_011547459.2 | 57.8% | 49.6% | (many diffs) |
| 30 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525175.2 | 57.7% | 49.6% | (many diffs) |
| 31 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001369501.1 | 56.6% | 48.1% | (many diffs) |
| 32 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722239.2 | 56.6% | 44.7% | (many diffs) |
| 33 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722252.3 | 56.6% | 44.7% | (many diffs) |
| 34 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721907.3 | 56.5% | 44.7% | (many diffs) |
| 35 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_006722226.3 | 56.5% | 44.5% | (many diffs) |
| 36 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_006722056.2 | 56.4% | 44.4% | (many diffs) |
| 37 | human | 100510707 | TBC1D3J | TBC1 domain family member 3J | XM_024450524.1 | 54.8% | 41.7% | (many diffs) |
| 38 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001369499.1 | 54.4% | 46.6% | (many diffs) |
| 39 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_011524175.2 | 54.4% | 46.6% | (many diffs) |
| 40 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722235.2 | 54.4% | 43.6% | (many diffs) |
| 41 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722236.1 | 54.4% | 43.6% | (many diffs) |
| 42 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722248.2 | 54.4% | 43.6% | (many diffs) |
| 43 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_011524176.2 | 54.4% | 43.6% | (many diffs) |
| 44 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721904.2 | 54.4% | 43.6% | (many diffs) |
| 45 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_011524814.2 | 54.4% | 43.6% | (many diffs) |
| 46 | human | 101060321 | TBC1D3G | TBC1 domain family member 3G | XM_005276914.3 | 54.4% | 43.4% | (many diffs) |
| 47 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_006722223.3 | 54.4% | 43.4% | (many diffs) |
| 48 | human | 414059 | TBC1D3B | TBC1 domain family member 3B | XM_005257980.4 | 54.4% | 43.3% | (many diffs) |
| 49 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_005257981.3 | 54.4% | 43.3% | (many diffs) |
| 50 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525172.2 | 54.3% | 43.3% | (many diffs) |
| 51 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525173.2 | 54.3% | 43.3% | (many diffs) |
| 52 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_017024010.2 | 52.1% | 50.3% | (many diffs) |
| 53 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_006722243.2 | 51% | 43.2% | (many diffs) |
| 54 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722249.2 | 51% | 40.3% | (many diffs) |
| 55 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_011524172.1 | 51% | 40.3% | (many diffs) |
| 56 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721905.2 | 51% | 40.3% | (many diffs) |
| 57 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_011524183.2 | 51% | 40.1% | (many diffs) |
| 58 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525174.2 | 50.9% | 40% | (many diffs) |
| 59 | human | 100510707 | TBC1D3J | TBC1 domain family member 3J | NM_001355571.1 | 49.5% | 38.9% | (many diffs) |
| 60 | human | 440452 | TBC1D3P2 | TBC1 domain family member 3... | NR_027486.1 | 45.9% | (many diffs) | |
| 61 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524059.2 | 38.3% | 33.2% | (many diffs) |
| 62 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524058.2 | 29.2% | 25.3% | (many diffs) |
| 63 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | NM_001304284.2 | 21.4% | 18.6% | (many diffs) |
| 64 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | NM_004505.4 | 21.4% | 18.6% | (many diffs) |
| 65 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524050.1 | 21.4% | 18.6% | (many diffs) |
| 66 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524051.2 | 21.4% | 18.6% | (many diffs) |
| 67 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524052.2 | 21.4% | 18.6% | (many diffs) |
| 68 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524053.2 | 21.4% | 18.6% | (many diffs) |
| 69 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524054.2 | 21.4% | 18.6% | (many diffs) |
| 70 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524055.2 | 21.4% | 18.6% | (many diffs) |
| 71 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524056.2 | 21.4% | 18.6% | (many diffs) |
| 72 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_017025290.1 | 21.4% | 18.6% | (many diffs) |
| 73 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524057.2 | 20.1% | 17.4% | (many diffs) |
| 74 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001369503.1 | 16.8% | 10.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1104
- ORF length:
- 1038
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CGTGGTAGAG GTCGTGGGTA GTTGGTGGGC ACAAGAGCGA GAGGACATCA 121 TTATGAAATA CGAAAAGGGA CACCGAGCTG GGCTGCCAGA GGACAAGGGG CCTAAGCCTT 181 TTGGAAGCTA CAACAACAAC ATCGATCACT TTGGGATGCA GCATGAGACG GAGCTGCCTC 241 CTCTGACTGC GCGGGAGGTG AAGCAAATTC GGCGGGAGAT CAGCCGAAAG AGCAAGTGGG 301 TGAAAATGCT GGGAGAATGG GACACCTACA AAAACAGCAG AAAGCTCATA GATCGAGCGT 361 ACCAGGGAAT TCCCATGAAC ATCCGGGGCC CGATGTGGTC AGTCCTCCTG AACATTGAGG 421 AAATCAAGTT GAAAAACCCC GGAAGATACC AGATCATGAA GGAGAAGGGC AAGAGGTCAT 481 CTGAACACAT CCAGCAGATG GACCTGGACG TAAGTGGGAC ATTAAGGAGG CATATATTCT 541 TCAGGGATCG ATACGGAACC AAGCAGCGGG AACTACTTTA CATCCTCCTG GCGTATGAGG 601 AGTATAACCC GGAGGTGGGC TACTGCAGGG ACCTGAGCCA CATCGCCGCC TTGTTCCTCC 661 TTTATCTTCC TGAGGAGGAT GCATTCTGGG CACTGGTGCA GCTGCTGGCC AGTGAGAGGC 721 ACTCCCTGCA GGGATTTCAC AGCCCAAATG GCGGGACCGT CCAGGGGCTC CAAGACCAAC 781 AGGAGCATGT GGTAGCCACG TCACTACCCA AGACCATGTG GCATCAGGAC AAGAAAGATC 841 TATGTGGGCA GTGTTCGTCC TTAGGCTGCC TCATCCGGAT ATTGATTGAT GGGATCTCTC 901 TCGGGCTCAC CCTGCGCCTC TGGGACGTGT ATCTGGTAGA AGGCGAACAG GCGTTCATGC 961 TGATAACAAA ATCGCCTTTA AGGTTCAGCA GAAGCGCCTC ACGAAGACGT CCAGGTGTGG 1021 CCCGTGGGCA CGTTTTTGGA ACCGGTTCGT TGATGCCTGG GCCAGGGATG ATGACACTGT 1081 GCTCAAGCAT CTTAGGGCCT CTATGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1141 agcattgctt atcaatttgt tgcaacgaac