Construct: ORF ccsbBroadEn_13693
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004366.1_s300c1, BRDN0000395280
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD20A5P (440482)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XM_011543861.3 | 35.1% | 33.8% | (many diffs) |
| 2 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | XM_011517879.2 | 35% | 33.8% | (many diffs) |
| 3 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XM_005272525.4 | 19% | 18.3% | (many diffs) |
| 4 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | NM_001012419.2 | 19% | 18.3% | (many diffs) |
| 5 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | XM_024447553.1 | 19% | 18.3% | (many diffs) |
| 6 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | NM_001012421.1 | 18.9% | 18.3% | (many diffs) |
| 7 | human | 84210 | ANKRD20A1 | ankyrin repeat domain 20 fa... | NM_032250.3 | 18.9% | 18.2% | (many diffs) |
| 8 | human | 728747 | ANKRD20A4 | ankyrin repeat domain 20 fa... | NM_001098805.1 | 18.9% | 18.2% | (many diffs) |
| 9 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XM_011543860.3 | 18.8% | 18.1% | (many diffs) |
| 10 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | XM_011517878.2 | 18.7% | 18.1% | (many diffs) |
| 11 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | XM_011517877.3 | 18.6% | 17.9% | (many diffs) |
| 12 | human | 440482 | ANKRD20A5P | ankyrin repeat domain 20 fa... | NR_040113.1 | 13.3% | (many diffs) | |
| 13 | human | 102723552 | ANKRD20A21P | ankyrin repeat domain 20 fa... | XR_002958558.1 | 11.2% | (many diffs) | |
| 14 | human | 110006327 | ANKRD20A4-ANKRD20A20P | ANKRD20A4-ANKRD20A20P readt... | NR_146419.1 | 10.6% | (many diffs) | |
| 15 | human | 729171 | ANKRD20A8P | ankyrin repeat domain 20 fa... | NR_003366.2 | 10.1% | (many diffs) | |
| 16 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XR_001746296.2 | 10.1% | (many diffs) | |
| 17 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XR_001746295.2 | 10% | (many diffs) | |
| 18 | human | 400110 | ANKRD20A19P | ankyrin repeat domain 20 fa... | NR_073430.1 | 8.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 564
- ORF length:
- 495
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAGAAAG 61 TTGGCACCAT GAAGTTGTTC GGCTTCAGGA GCCGCAGGGG CCAGACGGTC CTGGGCTCCA 121 TAGACCACCT CTACACGGGT TCCGGGTACC GAATCCGGTA CTCGGAACTG CAGAAGATCC 181 ACAAGGCAGC TGTCAAGGGC GACGCTGCGG AGATGGAGCG CTGTCTGGCG CGCAGGAGCG 241 GAGACCTTGA CGCCCTGGAC AAGCAGCACA GAACTGCTCT ACATTTGGCC TGTGCCAGTG 301 GCCATGTGAA AGTGGTCACT CTCCTGGTTA ACAGAAAATG TCAGATTGAT ATCTATGACA 361 AAGAAAATAG AACGCCTTTG ATACAGGCTG TCCATTGCCA GGAAGAGGCT TGTGCCGTTA 421 TTCTGCTGGA ACATGGTGCC AATCCAAACC TTAAGGATAT CTACGGCAAC ACTGCTCTCC 481 ATTATGCTGT GTATAGTGAG AGCACCTCAC TGGCAGAAAA ACTGCTTTTC CATGGTGAAA 541 ATATTGAAGC ACTGGACAAG GTATTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa 601 agcattgctt atcaatttgt tgcaacgaac