Construct: ORF ccsbBroadEn_13700

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016723.1_s300c1, BRDN0000457163
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ANKRD20A3 (441425)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 441425 ANKRD20A3 ankyrin repeat domain 20 fa... XM_005272525.4 99.9% 99.8% 1735T>G
2 human 441430 ANKRD20A2 ankyrin repeat domain 20 fa... XM_024447553.1 99.9% 99.8% 157T>C;2462A>C
3 human 441425 ANKRD20A3 ankyrin repeat domain 20 fa... NM_001012419.2 99.8% 99.7% 893_895delAGC;1738T>G
4 human 441430 ANKRD20A2 ankyrin repeat domain 20 fa... NM_001012421.1 99.7% 99.7% 157T>C;893_895delAGC;2465A>C
5 human 84210 ANKRD20A1 ankyrin repeat domain 20 fa... NM_032250.3 99.6% 99.3% (many diffs)
6 human 728747 ANKRD20A4 ankyrin repeat domain 20 fa... NM_001098805.1 99.4% 98.7% (many diffs)
7 human 441430 ANKRD20A2 ankyrin repeat domain 20 fa... XM_011517878.2 97.6% 97.1% (many diffs)
8 human 441425 ANKRD20A3 ankyrin repeat domain 20 fa... XM_011543860.3 97.6% 96.9% (many diffs)
9 human 441430 ANKRD20A2 ankyrin repeat domain 20 fa... XM_011517877.3 96.7% 96.4% (many diffs)
10 human 102723552 ANKRD20A21P ankyrin repeat domain 20 fa... XR_002958558.1 65% (many diffs)
11 human 440482 ANKRD20A5P ankyrin repeat domain 20 fa... NR_040113.1 62.6% (many diffs)
12 human 729171 ANKRD20A8P ankyrin repeat domain 20 fa... NR_003366.2 58.2% (many diffs)
13 human 110006327 ANKRD20A4-ANKRD20A20P ANKRD20A4-ANKRD20A20P readt... NR_146419.1 55.8% (many diffs)
14 human 441425 ANKRD20A3 ankyrin repeat domain 20 fa... XM_011543861.3 53.8% 53.2% (many diffs)
15 human 441430 ANKRD20A2 ankyrin repeat domain 20 fa... XM_011517879.2 53.7% 53.2% (many diffs)
16 human 441425 ANKRD20A3 ankyrin repeat domain 20 fa... XR_001746296.2 53% (many diffs)
17 human 441425 ANKRD20A3 ankyrin repeat domain 20 fa... XR_001746295.2 52.3% (many diffs)
18 human 284232 ANKRD20A9P ankyrin repeat domain 20 fa... NR_138091.1 48.2% (many diffs)
19 human 105379417 LOC105379417 ankyrin repeat domain-conta... XM_017030104.1 20.1% 15.5% (many diffs)
20 human 102723382 LOC102723382 ankyrin repeat domain-conta... XM_011546266.2 18.1% 14.7% (many diffs)
21 human 100874392 ANKRD20A12P ankyrin repeat domain 20 fa... NR_046228.1 18.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2535
ORF length:
2466
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAAGTTATTC GGCTTCGGGA GCCGCAGGGG CCAGACGGCC CAGGGCTCCA
121TAGACCACGT CTACACGGGT TCCGGATACC GAATCCGGGA CTCCGAACTG CAGAAGATCC
181ACAGGGCAGC TGTCAAAGGC GACGCCGCGG AGGTGGAGCG CTGCCTGGCG CGCAGGAGCG
241GAGACCTGGA CGCCCTGGAC AAGCAGCACA GAACTGCTCT ACACTTGGCC TGTGCCAGTG
301GCCATGTGCA AGTGGTCACT CTCCTGGTTA ACAGAAAATG CCAGATTGAT GTCTGTGACA
361AAGAAAACAG AACGCCTTTG ATACAGGCTG TCCATTGCCA GGAAGAGGCT TGTGCCGTTA
421TTCTGCTGGA ACATGGCGCC AATCCAAACC TTAAGGATAT CTACGGCAAC ACTGCTCTCC
481ATTATGCCGT GTATAGTGAG AGCACCTCAC TGGCAGAAAA ACTGCTTTCC CATGGTGCAC
541ATATTGAAGC ACTGGACAAG GACAATAATA CCCCACTTTT ATTTGCTATA ATTTGCAAGA
601AAGAGAAAAT GGTGGAATTT TTATTGAAAA GGAAAGCAAG TTCACATGCC GTTGATAGGC
661TGAGACGGTC AGCTCTCATG CTTGCTGTAT ACTATGACTC ACCAGGTATT GTCAATATCC
721TTCTTAAGCA AAATATTGAT GTCTTCGCTC AAGACATGTG TGGACGAGAT GCAGAAGATT
781ATGCTATTTC TCATCATTTG ACAAAAATTC AACAACAAAT TTTGGAACAT AAAAAGAAGA
841TACTTAAAAA GGAGAAATCA GATGTTGGAA GTTCTGATGA ATCTGCAGTC AGCATTTTCC
901ATGAACTGCG TGTGGATTCA TTGCCTGCAT CGGATGACAA AGACTTGAAT GTTGCTACTA
961AGTGTGTCCC CGAGAAAGTG TCAGAGCCTT TACCTGGATC TTCGCATGAA AAAGGAAACA
1021GAATAGTCAA TGGACAAGGA GAAGGGCCTC CTGCAAAACA TCCTTCCTTG AAGCCTAGCA
1081CTGAAGTAGA AGATCCTGCT GTGAAAGGAG CAGTACAAAG AAAGAATGTA CAGACATTGA
1141GAGCAGAACA AGCCTTACCA GTGGCTTCAG AGGAAGAGCA AGAAAGGCAT GAAAGAAGTG
1201AAAAGAAGCA ACCACAGGTC AAAGAAGGAA ATAATACAAA CAAAAGTGAA AAAATACAAC
1261TTTCAGAAAA TATATGTGAT AGTACATCTT CTGCTGCTGC TGGCAGATTA ACCCAACAAA
1321GAAAGATTGG GAAAACGTAT CCTCAGCAAT TTCCCAAGAA GCTGAAGGAA GAGCATGATA
1381GATGCACCTT AAAACAAGAA AATGAAGAAA AAACAAATGT TAATATGCTG TACAAAAAAA
1441ATAGAGAAGA ATTAGAAAGG AAAGAGAAAC AATATAAGAA AGAAGTTGAA GCAAAACAAC
1501TTGAACCAAC TGTTCAGTCA CTAGAGATGA AATCAAAGAC TGCAAGAAAT ACTCCAAATC
1561GGGATTTTCA TAATCATGAA GAAATGAAAG GTCTGATGGA TGAAAATTGC ATTTTGAAGG
1621CAGATATTGC TATACTCAGA CAGGAAATAT GTACAATGAA AAATGACAAC TTGGAAAAAG
1681AAAATAAATA TCTTAAGGAC ATTAAAATTG TTAAAGAAAC AAATGCTGCC CTTGAAAAGT
1741ATATAAAACT CAATGAGGAA ATGATAACAG AAACAGCATT CCGGTATCAA CAAGAGCTTA
1801ATGATCTCAA GGCTGAGAAT ACAAGGCTCA ATGCCGAACT GTTGAAGGAA AAAGAAAGCA
1861AGAAAAGACT GGAAGCTGAC ATTGAATCTT ATCAGTCTAG ACTGGCTGCT GCTATAAGCA
1921AACACAGTGA AAGTGTGAAA ACAGAAAGAA ACCTAAAACT TGCTTTAGAG AGAACACGAG
1981ATGTTTCTGT ACAAGTAGAA ATGAGTTCTG CTATTTCCAA AGTAAAAGAT GAGAATGAGT
2041TTCTTACTGA ACAACTTTCT GAAACACAAA TTAAATTCAA TGCCTTAAAA GATAAGTTCC
2101GTAAGACAAG AGATAGTCTC AGAAAAAAGT CATTGGCTTT AGAAACTGTA CAAAACGACC
2161TAAGCCAAAC ACAGCAGCAA ACACAGGAAA TGAAAGAGAT GTATCAAAAT GCAGAAGCTA
2221AAGTGAATAA TTCCACTGGA AAGTGGAACT GTGTAGAAGA GAGGATATGT CACCTCCAAC
2281GTGAAAATGC GTGGCTTGTA CAGCAACTAG ATGACGTTCA TCAGAAAGAG GATCATAAAG
2341AGATAGTAAC TAATATCCAA AGAGGCTTTA TTGAGAGTGG AAAGAAAGAC CTCGTGCTAG
2401AAGAGAAAAG TAAGAAGCTA ATGAATGAAT GTGATCATTT AAAAGAAAGT CTCTTTCAGT
2461ATGAGAGAGA GAAAACAGAA GGAGTAGTAA GTATCAAGGA AGATAAATAT TTTCAAACTT
2521CTAGAAAGAC AATTTTGCCA ACTTTCTTGT ACAAAGTTGG cattataaga aagcattgct
2581tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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