Construct: ORF ccsbBroadEn_13700
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016723.1_s300c1, BRDN0000457163
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD20A3 (441425)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XM_005272525.4 | 99.9% | 99.8% | 1735T>G |
| 2 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | XM_024447553.1 | 99.9% | 99.8% | 157T>C;2462A>C |
| 3 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | NM_001012419.2 | 99.8% | 99.7% | 893_895delAGC;1738T>G |
| 4 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | NM_001012421.1 | 99.7% | 99.7% | 157T>C;893_895delAGC;2465A>C |
| 5 | human | 84210 | ANKRD20A1 | ankyrin repeat domain 20 fa... | NM_032250.3 | 99.6% | 99.3% | (many diffs) |
| 6 | human | 728747 | ANKRD20A4 | ankyrin repeat domain 20 fa... | NM_001098805.1 | 99.4% | 98.7% | (many diffs) |
| 7 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | XM_011517878.2 | 97.6% | 97.1% | (many diffs) |
| 8 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XM_011543860.3 | 97.6% | 96.9% | (many diffs) |
| 9 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | XM_011517877.3 | 96.7% | 96.4% | (many diffs) |
| 10 | human | 102723552 | ANKRD20A21P | ankyrin repeat domain 20 fa... | XR_002958558.1 | 65% | (many diffs) | |
| 11 | human | 440482 | ANKRD20A5P | ankyrin repeat domain 20 fa... | NR_040113.1 | 62.6% | (many diffs) | |
| 12 | human | 729171 | ANKRD20A8P | ankyrin repeat domain 20 fa... | NR_003366.2 | 58.2% | (many diffs) | |
| 13 | human | 110006327 | ANKRD20A4-ANKRD20A20P | ANKRD20A4-ANKRD20A20P readt... | NR_146419.1 | 55.8% | (many diffs) | |
| 14 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XM_011543861.3 | 53.8% | 53.2% | (many diffs) |
| 15 | human | 441430 | ANKRD20A2 | ankyrin repeat domain 20 fa... | XM_011517879.2 | 53.7% | 53.2% | (many diffs) |
| 16 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XR_001746296.2 | 53% | (many diffs) | |
| 17 | human | 441425 | ANKRD20A3 | ankyrin repeat domain 20 fa... | XR_001746295.2 | 52.3% | (many diffs) | |
| 18 | human | 284232 | ANKRD20A9P | ankyrin repeat domain 20 fa... | NR_138091.1 | 48.2% | (many diffs) | |
| 19 | human | 105379417 | LOC105379417 | ankyrin repeat domain-conta... | XM_017030104.1 | 20.1% | 15.5% | (many diffs) |
| 20 | human | 102723382 | LOC102723382 | ankyrin repeat domain-conta... | XM_011546266.2 | 18.1% | 14.7% | (many diffs) |
| 21 | human | 100874392 | ANKRD20A12P | ankyrin repeat domain 20 fa... | NR_046228.1 | 18.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2535
- ORF length:
- 2466
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAGTTATTC GGCTTCGGGA GCCGCAGGGG CCAGACGGCC CAGGGCTCCA 121 TAGACCACGT CTACACGGGT TCCGGATACC GAATCCGGGA CTCCGAACTG CAGAAGATCC 181 ACAGGGCAGC TGTCAAAGGC GACGCCGCGG AGGTGGAGCG CTGCCTGGCG CGCAGGAGCG 241 GAGACCTGGA CGCCCTGGAC AAGCAGCACA GAACTGCTCT ACACTTGGCC TGTGCCAGTG 301 GCCATGTGCA AGTGGTCACT CTCCTGGTTA ACAGAAAATG CCAGATTGAT GTCTGTGACA 361 AAGAAAACAG AACGCCTTTG ATACAGGCTG TCCATTGCCA GGAAGAGGCT TGTGCCGTTA 421 TTCTGCTGGA ACATGGCGCC AATCCAAACC TTAAGGATAT CTACGGCAAC ACTGCTCTCC 481 ATTATGCCGT GTATAGTGAG AGCACCTCAC TGGCAGAAAA ACTGCTTTCC CATGGTGCAC 541 ATATTGAAGC ACTGGACAAG GACAATAATA CCCCACTTTT ATTTGCTATA ATTTGCAAGA 601 AAGAGAAAAT GGTGGAATTT TTATTGAAAA GGAAAGCAAG TTCACATGCC GTTGATAGGC 661 TGAGACGGTC AGCTCTCATG CTTGCTGTAT ACTATGACTC ACCAGGTATT GTCAATATCC 721 TTCTTAAGCA AAATATTGAT GTCTTCGCTC AAGACATGTG TGGACGAGAT GCAGAAGATT 781 ATGCTATTTC TCATCATTTG ACAAAAATTC AACAACAAAT TTTGGAACAT AAAAAGAAGA 841 TACTTAAAAA GGAGAAATCA GATGTTGGAA GTTCTGATGA ATCTGCAGTC AGCATTTTCC 901 ATGAACTGCG TGTGGATTCA TTGCCTGCAT CGGATGACAA AGACTTGAAT GTTGCTACTA 961 AGTGTGTCCC CGAGAAAGTG TCAGAGCCTT TACCTGGATC TTCGCATGAA AAAGGAAACA 1021 GAATAGTCAA TGGACAAGGA GAAGGGCCTC CTGCAAAACA TCCTTCCTTG AAGCCTAGCA 1081 CTGAAGTAGA AGATCCTGCT GTGAAAGGAG CAGTACAAAG AAAGAATGTA CAGACATTGA 1141 GAGCAGAACA AGCCTTACCA GTGGCTTCAG AGGAAGAGCA AGAAAGGCAT GAAAGAAGTG 1201 AAAAGAAGCA ACCACAGGTC AAAGAAGGAA ATAATACAAA CAAAAGTGAA AAAATACAAC 1261 TTTCAGAAAA TATATGTGAT AGTACATCTT CTGCTGCTGC TGGCAGATTA ACCCAACAAA 1321 GAAAGATTGG GAAAACGTAT CCTCAGCAAT TTCCCAAGAA GCTGAAGGAA GAGCATGATA 1381 GATGCACCTT AAAACAAGAA AATGAAGAAA AAACAAATGT TAATATGCTG TACAAAAAAA 1441 ATAGAGAAGA ATTAGAAAGG AAAGAGAAAC AATATAAGAA AGAAGTTGAA GCAAAACAAC 1501 TTGAACCAAC TGTTCAGTCA CTAGAGATGA AATCAAAGAC TGCAAGAAAT ACTCCAAATC 1561 GGGATTTTCA TAATCATGAA GAAATGAAAG GTCTGATGGA TGAAAATTGC ATTTTGAAGG 1621 CAGATATTGC TATACTCAGA CAGGAAATAT GTACAATGAA AAATGACAAC TTGGAAAAAG 1681 AAAATAAATA TCTTAAGGAC ATTAAAATTG TTAAAGAAAC AAATGCTGCC CTTGAAAAGT 1741 ATATAAAACT CAATGAGGAA ATGATAACAG AAACAGCATT CCGGTATCAA CAAGAGCTTA 1801 ATGATCTCAA GGCTGAGAAT ACAAGGCTCA ATGCCGAACT GTTGAAGGAA AAAGAAAGCA 1861 AGAAAAGACT GGAAGCTGAC ATTGAATCTT ATCAGTCTAG ACTGGCTGCT GCTATAAGCA 1921 AACACAGTGA AAGTGTGAAA ACAGAAAGAA ACCTAAAACT TGCTTTAGAG AGAACACGAG 1981 ATGTTTCTGT ACAAGTAGAA ATGAGTTCTG CTATTTCCAA AGTAAAAGAT GAGAATGAGT 2041 TTCTTACTGA ACAACTTTCT GAAACACAAA TTAAATTCAA TGCCTTAAAA GATAAGTTCC 2101 GTAAGACAAG AGATAGTCTC AGAAAAAAGT CATTGGCTTT AGAAACTGTA CAAAACGACC 2161 TAAGCCAAAC ACAGCAGCAA ACACAGGAAA TGAAAGAGAT GTATCAAAAT GCAGAAGCTA 2221 AAGTGAATAA TTCCACTGGA AAGTGGAACT GTGTAGAAGA GAGGATATGT CACCTCCAAC 2281 GTGAAAATGC GTGGCTTGTA CAGCAACTAG ATGACGTTCA TCAGAAAGAG GATCATAAAG 2341 AGATAGTAAC TAATATCCAA AGAGGCTTTA TTGAGAGTGG AAAGAAAGAC CTCGTGCTAG 2401 AAGAGAAAAG TAAGAAGCTA ATGAATGAAT GTGATCATTT AAAAGAAAGT CTCTTTCAGT 2461 ATGAGAGAGA GAAAACAGAA GGAGTAGTAA GTATCAAGGA AGATAAATAT TTTCAAACTT 2521 CTAGAAAGAC AATTTTGCCA ACTTTCTTGT ACAAAGTTGG cattataaga aagcattgct 2581 tatcaatttg ttgcaacgaa c