Construct: ORF ccsbBroadEn_14172

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008904.1_s300c1, BRDN0000391487
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
APTX (54840)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54840 APTX aprataxin NM_001369002.1 100% 100%
2 human 54840 APTX aprataxin NM_001369003.1 100% 100%
3 human 54840 APTX aprataxin NM_001369004.1 100% 100%
4 human 54840 APTX aprataxin NM_001369005.1 100% 100%
5 human 54840 APTX aprataxin NM_001370669.1 100% 100%
6 human 54840 APTX aprataxin NM_001370670.1 100% 100%
7 human 54840 APTX aprataxin NM_001370673.1 100% 100%
8 human 54840 APTX aprataxin XM_011517938.2 100% 100%
9 human 54840 APTX aprataxin NM_001195250.2 85% 84.7% (many diffs)
10 human 54840 APTX aprataxin NM_001195254.1 85% 84.7% (many diffs)
11 human 54840 APTX aprataxin NM_001369000.1 85% 84.7% (many diffs)
12 human 54840 APTX aprataxin NM_001369001.1 85% 84.7% (many diffs)
13 human 54840 APTX aprataxin NM_001369006.1 80.3% 79.9% 609_610insGCTGTGATC;612_613ins141
14 human 54840 APTX aprataxin NM_001195252.2 79% 63.6% (many diffs)
15 human 54840 APTX aprataxin NM_001195248.2 74.2% 74.2% 1_264del
16 human 54840 APTX aprataxin NM_001195249.1 74.2% 74.2% 1_264del
17 human 54840 APTX aprataxin NM_001368995.1 74.2% 74.2% 1_264del
18 human 54840 APTX aprataxin NM_001368996.1 74.2% 74.2% 1_264del
19 human 54840 APTX aprataxin NM_001368997.1 74.2% 74.2% 1_264del
20 human 54840 APTX aprataxin NM_001368998.1 74.2% 74.2% 1_264del
21 human 54840 APTX aprataxin NM_175073.2 74.2% 74.2% 1_264del
22 human 54840 APTX aprataxin NM_001195251.1 59.6% 59.3% 1_264del;873_874insGCTGTGATC;876_877ins141
23 human 54840 APTX aprataxin NM_001368999.1 59.6% 59.3% 1_264del;873_874insGCTGTGATC;876_877ins141
24 human 54840 APTX aprataxin NM_175069.3 59.6% 59.3% 1_264del;873_874insGCTGTGATC;876_877ins141
25 human 54840 APTX aprataxin XM_017014832.1 56.1% 43.7% (many diffs)
26 human 54840 APTX aprataxin XM_017014833.2 55.4% 49.4% (many diffs)
27 human 54840 APTX aprataxin XM_024447578.1 53.7% 46.3% (many diffs)
28 human 54840 APTX aprataxin XM_017014836.2 53% 47.2% (many diffs)
29 human 54840 APTX aprataxin XM_017014831.1 51.3% 42.2% (many diffs)
30 human 54840 APTX aprataxin NR_160930.1 40.4% (many diffs)
31 human 54840 APTX aprataxin NR_160921.1 39.9% (many diffs)
32 human 54840 APTX aprataxin NR_036577.1 39.5% (many diffs)
33 human 54840 APTX aprataxin NR_160926.1 39.4% (many diffs)
34 human 54840 APTX aprataxin NR_160923.1 39.1% (many diffs)
35 human 54840 APTX aprataxin NR_160924.1 39% (many diffs)
36 human 54840 APTX aprataxin XR_929279.1 38.1% (many diffs)
37 human 54840 APTX aprataxin NR_160931.1 35.7% (many diffs)
38 human 54840 APTX aprataxin NR_160922.1 35.5% (many diffs)
39 human 54840 APTX aprataxin NR_160925.1 35.4% (many diffs)
40 human 54840 APTX aprataxin XR_929276.3 32.1% 1_343del;849_1220del;1478_2368del
41 human 54840 APTX aprataxin XR_001746326.2 32% 1_351del;857_1228del;1486_2374del
42 human 54840 APTX aprataxin XR_929277.3 31.8% 1_343del;849_1243del;1501_2391del
43 human 54840 APTX aprataxin XR_001746325.2 31.4% (many diffs)
44 human 54840 APTX aprataxin NR_160920.1 27% 1_330del;607_608ins227;866_1750del
45 human 54840 APTX aprataxin NR_160929.1 26.3% 1_384del;661_662ins227;920_1804del
46 human 54840 APTX aprataxin NR_160928.1 24.2% (many diffs)
47 human 54840 APTX aprataxin NR_160927.1 24% 1_580del;857_858ins227;1116_2000del
48 mouse 66408 Aptx aprataxin NM_001025445.2 76.9% 74.4% (many diffs)
49 mouse 66408 Aptx aprataxin XM_006538171.3 76.9% 74.4% (many diffs)
50 mouse 66408 Aptx aprataxin NM_001025444.3 63.7% 61.5% (many diffs)
51 mouse 66408 Aptx aprataxin XM_006538166.3 63.7% 61.5% (many diffs)
52 mouse 66408 Aptx aprataxin XM_006538167.3 63.7% 61.5% (many diffs)
53 mouse 66408 Aptx aprataxin XM_006538168.3 63.7% 61.5% (many diffs)
54 mouse 66408 Aptx aprataxin XM_006538169.3 63.7% 61.5% (many diffs)
55 mouse 66408 Aptx aprataxin XM_006538170.3 63.7% 61.5% (many diffs)
56 mouse 66408 Aptx aprataxin XM_011250084.2 62.8% 60.6% (many diffs)
57 mouse 66408 Aptx aprataxin NM_025545.4 62.5% 60.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
831
ORF length:
762
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGTGAATGAA CTTTATCCAT ATATTGTAGA GTTTGAGGAA GAGGCAAAGA
121ACCCTGGCCT GGAAACACAC AGGAAGAGAA AGAGATCAGG CAACAGTGAT TCTATAGAAA
181GGGATGCTGC TCAGGAAGCT GAGGCTGGGA CAGGGCTGGA ACCTGGGAGC AACTCTGGCC
241AATGCTCTGT GCCCCTAAAG AAGGGAAAAG ATGCACCTAT CAAAAAGGAA TCCCTGGGCC
301ACTGGAGTCA AGGCTTGAAG ATTTCTATGC AGGACCCCAA AATGCAGGTT TACAAAGATG
361AGCAGGTGGT GGTGATAAAG GATAAATACC CAAAGGCCCG TTACCATTGG CTGGTCTTAC
421CGTGGACCTC CATTTCCAGT CTGAAGGCTG TGGCCAGGGA ACACCTTGAA CTCCTTAAGC
481ATATGCACAC TGTGGGGGAA AAGGTGATTG TAGATTTTGC TGGGTCCAGC AAACTCCGCT
541TCCGATTGGG CTACCACGCC ATTCCGAGTA TGAGCCATGT ACATCTTCAT GTGATCAGCC
601AGGATTTTGA TTCTCCTTGC CTTAAAAACA AAAAACATTG GAATTCTTTC AATACAGAAT
661ACTTCCTAGA ATCACAAGCT GTGATCGAGA TGGTACAAGA GGCTGGTAGA GTAACTGTCC
721GAGATGGGAT GCCTGAGCTC TTGAAGCTGC CCCTTCGTTG TCATGAGTGC CAGCAGCTGC
781TGCCTTCCAT TCCTCAGCTG AAAGAACATC TCAGGAAGCA CTGGACACAG TTGCCAACTT
841TCTTGTCAAA GTtggcatta taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)