Construct: ORF ccsbBroadEn_14638

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019036.1_s300c1, BRDN0000458654
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FGFR1 (2260)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2260 FGFR1 fibroblast growth factor re... NM_001174065.2 100% 100%
2 human 2260 FGFR1 fibroblast growth factor re... NM_015850.4 100% 100%
3 human 2260 FGFR1 fibroblast growth factor re... NM_023110.3 99.7% 99.7% 442_447delCGTATG
4 human 2260 FGFR1 fibroblast growth factor re... XM_017013224.2 99.7% 99.7% 1272_1273insGTAACA
5 human 2260 FGFR1 fibroblast growth factor re... XM_017013225.2 99.7% 99.7% 1272_1273insGTAACA
6 human 2260 FGFR1 fibroblast growth factor re... NM_001174063.2 99.5% 99.5% 442_447delCGTATG;1278_1279insGTAACA
7 human 2260 FGFR1 fibroblast growth factor re... NM_001174064.2 97.7% 95.6% (many diffs)
8 human 2260 FGFR1 fibroblast growth factor re... NM_001174067.1 96.1% 96.1% 1_99del
9 human 2260 FGFR1 fibroblast growth factor re... XM_011544446.2 95.9% 95.9% 1_99del;541_546delCGTATG
10 human 2260 FGFR1 fibroblast growth factor re... XM_017013220.1 95.8% 95.8% 1_99del;1371_1372insGTAACA
11 human 2260 FGFR1 fibroblast growth factor re... XM_011544447.2 95.6% 95.6% 1_99del;541_546delCGTATG;1377_1378insGTAACA
12 human 2260 FGFR1 fibroblast growth factor re... NM_001354367.1 94.6% 91% (many diffs)
13 human 2260 FGFR1 fibroblast growth factor re... XM_006716307.1 94.6% 91% (many diffs)
14 human 2260 FGFR1 fibroblast growth factor re... XM_006716303.3 94.4% 90.8% (many diffs)
15 human 2260 FGFR1 fibroblast growth factor re... XM_006716304.1 94.4% 90.8% (many diffs)
16 human 2260 FGFR1 fibroblast growth factor re... XM_017013221.1 94.4% 90.8% (many diffs)
17 human 2260 FGFR1 fibroblast growth factor re... NM_001354369.1 94.4% 90.8% (many diffs)
18 human 2260 FGFR1 fibroblast growth factor re... XM_017013222.2 94.1% 90.6% (many diffs)
19 human 2260 FGFR1 fibroblast growth factor re... XM_024447097.1 92.6% 87.2% (many diffs)
20 human 2260 FGFR1 fibroblast growth factor re... XM_011544444.1 91% 87.6% (many diffs)
21 human 2260 FGFR1 fibroblast growth factor re... XM_011544443.2 90.8% 87.4% (many diffs)
22 human 2260 FGFR1 fibroblast growth factor re... XM_017013219.1 90.8% 87.4% (many diffs)
23 human 2260 FGFR1 fibroblast growth factor re... XM_011544445.2 90.6% 87.2% (many diffs)
24 human 2260 FGFR1 fibroblast growth factor re... NM_023106.3 89.1% 89.1% 89_90ins267
25 human 2260 FGFR1 fibroblast growth factor re... NM_001174066.2 88.9% 88.9% 89_90ins267;175_180delCGTATG
26 human 2260 FGFR1 fibroblast growth factor re... NM_023105.3 88.9% 88.9% 89_90ins267;175_180delCGTATG
27 human 2260 FGFR1 fibroblast growth factor re... NM_001354368.2 88.9% 88.9% 89_90ins267;1005_1006insGTAACA
28 human 2260 FGFR1 fibroblast growth factor re... XM_011544450.2 85.6% 85.6% 1_99del;188_189ins267
29 human 2260 FGFR1 fibroblast growth factor re... XM_017013227.1 85.4% 85.4% 1_99del;188_189ins267;1104_1105insGTAACA
30 human 2260 FGFR1 fibroblast growth factor re... XM_017013226.1 85.2% 85.2% (many diffs)
31 human 2260 FGFR1 fibroblast growth factor re... NM_001354370.1 84% 80.6% (many diffs)
32 human 2260 FGFR1 fibroblast growth factor re... XM_006716314.2 84% 80.6% (many diffs)
33 human 2260 FGFR1 fibroblast growth factor re... XM_006716310.3 83.8% 80.4% (many diffs)
34 human 2260 FGFR1 fibroblast growth factor re... XM_006716311.1 83.8% 80.4% (many diffs)
35 human 2260 FGFR1 fibroblast growth factor re... XM_006716312.2 83.8% 80.4% (many diffs)
36 human 2260 FGFR1 fibroblast growth factor re... XM_011544451.1 82.2% 76.9% (many diffs)
37 human 2260 FGFR1 fibroblast growth factor re... XM_011544449.1 80.8% 77.6% (many diffs)
38 human 2260 FGFR1 fibroblast growth factor re... XM_011544448.1 80.7% 77.4% (many diffs)
39 human 2260 FGFR1 fibroblast growth factor re... XR_001745495.1 67.5% (many diffs)
40 human 2260 FGFR1 fibroblast growth factor re... XM_017013230.1 60.7% 60.7% 0_1ins960;312_313insGTAACA
41 human 2260 FGFR1 fibroblast growth factor re... XR_001745496.1 58.9% (many diffs)
42 human 2260 FGFR1 fibroblast growth factor re... XM_017013229.2 56.3% 53.2% (many diffs)
43 human 2260 FGFR1 fibroblast growth factor re... XM_011544452.2 47.1% 37.5% (many diffs)
44 human 2260 FGFR1 fibroblast growth factor re... XM_017013231.1 47% 37.5% (many diffs)
45 mouse 14182 Fgfr1 fibroblast growth factor re... NM_001079908.2 89.8% 98.5% (many diffs)
46 mouse 14182 Fgfr1 fibroblast growth factor re... XM_006509013.1 89.8% 98.5% (many diffs)
47 mouse 14182 Fgfr1 fibroblast growth factor re... NM_010206.3 89.6% 98.2% (many diffs)
48 mouse 14182 Fgfr1 fibroblast growth factor re... XM_006509010.2 89.6% 98.2% (many diffs)
49 mouse 14182 Fgfr1 fibroblast growth factor re... XM_006509012.1 89.6% 98.2% (many diffs)
50 mouse 14182 Fgfr1 fibroblast growth factor re... XM_011242120.1 89.4% 98% (many diffs)
51 mouse 14182 Fgfr1 fibroblast growth factor re... XM_011242121.1 80% 88.2% (many diffs)
52 mouse 14182 Fgfr1 fibroblast growth factor re... NM_001079909.2 79.8% 88% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2529
ORF length:
2460
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcaccat gtggagctgg aagtgcctcc tcttctgggc tgtgctggtc acagccacac
121tctgcaccgc taggccgtcc ccgaccttgc ctgaacaagc ccagccctgg ggagcccctg
181tggaagtgga gtccttcctg gtccaccccg gtgacctgct gcagcttcgc tgtcggctgc
241gggacgatgt gcagagcatc aactggctgc gggacggggt gcagctggcg gaaagcaacc
301gcacccgcat cacaggggag gaggtggagg tgcaggactc cgtgcccgca gactccggcc
361tctatgcttg cgtaaccagc agcccctcgg gcagtgacac cacctacttc tccgtcaatg
421tttcagatgc tctcccctcc tcggaggatg atgatgatga tgatgactcc tcttcagagg
481agaaagaaac agataacacc aaaccaaacc ccgtagctcc atattggaca tccccagaaa
541agatggaaaa gaaattgcat gcagtgccgg ctgccaagac agtgaagttc aaatgccctt
601ccagtgggac cccaaacccc acactgcgct ggttgaaaaa tggcaaagaa ttcaaacctg
661accacagaat tggaggctac aaggtccgtt atgccacctg gagcatcata atggactctg
721tggtgccctc tgacaagggc aactacacct gcattgtgga gaatgagtac ggcagcatca
781accacacata ccagctggat gtcgtggagc ggtcccctca ccggcccatc ctgcaagcag
841ggttgcccgc caacaaaaca gtggccctgg gtagcaacgt ggagttcatg tgtaaggtgt
901acagtgaccc gcagccgcac atccagtggc taaagcacat cgaggtgaat gggagcaaga
961ttggcccaga caacctgcct tatgtccaga tcttgaagac tgctggagtt aataccaccg
1021acaaagagat ggaggtgctt cacttaagaa atgtctcctt tgaggacgca ggggagtata
1081cgtgcttggc gggtaactct atcggactct cccatcactc tgcatggttg accgttctgg
1141aagccctgga agagaggccg gcagtgatga cctcgcccct gtacctggag atcatcatct
1201attgcacagg ggccttcctc atctcctgca tggtggggtc ggtcatcgtc tacaagatga
1261agagtggtac caagaagagt gacttccaca gccagatggc tgtgcacaag ctggccaaga
1321gcatccctct gcgcagacag gtaacagtgt ctgctgactc cagtgcatcc atgaactctg
1381gggttcttct ggttcggcca tcacggctct cctccagtgg gactcccatg ctagcagggg
1441tctctgagta tgagcttccc gaagaccctc gctgggagct gcctcgggac agactggtct
1501taggcaaacc cctgggagag ggctgctttg ggcaggtggt gttggcagag gctatcgggc
1561tggacaagga caaacccaac cgtgtgacca aagtggctgt gaagatgttg aagtcggacg
1621caacagagaa agacttgtca gacctgatct cagaaatgga gatgatgaag atgatcggga
1681agcataagaa tatcatcaac ctgctggggg cctgcacgca ggatggtccc ttgtatgtca
1741tcgtggagta tgcctccaag ggcaacctgc gggagtacct gcaggcccgg aggcccccag
1801ggctggaata ctgctacaac cccagccaca acccagagga gcagctctcc tccaaggacc
1861tggtgtcctg cgcctaccag gtggcccgag gcatggagta tctggcctcc aagaagtgca
1921tacaccgaga cctggcagcc aggaatgtcc tggtgacaga ggacaatgtg atgaagatag
1981cagactttgg cctcgcacgg gacattcacc acatcgacta ctataaaaag acaaccaacg
2041gccgactgcc tgtgaagtgg atggcacccg aggcattatt tgaccggatc tacacccacc
2101agagtgatgt gtggtctttc ggggtgctcc tgtgggagat cttcactctg ggcggctccc
2161cataccccgg tgtgcctgtg gaggaacttt tcaagctgct gaaggagggt caccgcatgg
2221acaagcccag taactgcacc aacgagctgt acatgatgat gcgggactgc tggcatgcag
2281tgccctcaca gagacccacc ttcaagcagc tggtggaaga cctggaccgc atcgtggcct
2341tgacctccaa ccaggagtac ctggacctgt ccatgcccct ggaccagtac tcccccagct
2401ttcccgacac ccggagctct acgtgctcct caggggagga ttccgtcttc tctcatgagc
2461cgctgcccga ggagccctgc ctgccccgac acccagccca gcttgccaat ggcggactca
2521aacgccgctt gccaactttc ttgtacaaag ttggcattat aagaaagcat tgcttatcaa
2581tttgttgcaa cgaac

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