Construct: ORF ccsbBroadEn_14721

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018997.1_s300c1, BRDN0000458615
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NTRK2 (4915)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4915 NTRK2 neurotrophic receptor tyros... NM_001018064.3 100% 100%
2 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369532.1 100% 100%
3 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369533.1 100% 100%
4 human 4915 NTRK2 neurotrophic receptor tyros... XM_011518718.3 100% 100%
5 human 4915 NTRK2 neurotrophic receptor tyros... XM_017014752.1 100% 100%
6 human 4915 NTRK2 neurotrophic receptor tyros... XM_017014753.2 100% 100%
7 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369534.1 98.5% 98.5% 1158_1159ins36
8 human 4915 NTRK2 neurotrophic receptor tyros... NM_006180.4 98% 98% 1396_1443del
9 human 4915 NTRK2 neurotrophic receptor tyros... XM_005252001.3 98% 98% 1396_1443del
10 human 4915 NTRK2 neurotrophic receptor tyros... XM_005252003.3 98% 98% 1396_1443del
11 human 4915 NTRK2 neurotrophic receptor tyros... XM_005252004.2 98% 98% 1396_1443del
12 human 4915 NTRK2 neurotrophic receptor tyros... XM_017014751.2 98% 98% 1396_1443del
13 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369535.1 81% 81% 0_1ins468
14 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369536.1 79.4% 79.4% 0_1ins468;928_975del
15 human 4915 NTRK2 neurotrophic receptor tyros... NM_001018066.3 64.5% 64.2% (many diffs)
16 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369538.1 64.5% 64.2% (many diffs)
17 human 4915 NTRK2 neurotrophic receptor tyros... XM_011518720.3 64.5% 64.2% (many diffs)
18 human 4915 NTRK2 neurotrophic receptor tyros... NM_001018065.2 63.2% 63% (many diffs)
19 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369537.1 63.2% 63% (many diffs)
20 human 4915 NTRK2 neurotrophic receptor tyros... XM_005252006.4 63.2% 63% (many diffs)
21 human 4915 NTRK2 neurotrophic receptor tyros... XM_017014755.1 63.2% 63% (many diffs)
22 human 4915 NTRK2 neurotrophic receptor tyros... NM_001007097.3 57.2% 56.3% (many diffs)
23 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369539.1 57.2% 56.3% (many diffs)
24 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369540.1 57.2% 56.3% (many diffs)
25 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369541.1 57.2% 56.3% (many diffs)
26 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369542.1 57.2% 56.3% (many diffs)
27 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369543.1 57.2% 56.3% (many diffs)
28 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369544.1 57.2% 56.3% (many diffs)
29 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369545.1 57.2% 56.3% (many diffs)
30 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369548.1 57.2% 56.3% (many diffs)
31 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369549.1 57.2% 56.3% (many diffs)
32 human 4915 NTRK2 neurotrophic receptor tyros... XM_017014760.2 57.2% 56.3% (many diffs)
33 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369547.1 56.9% 56.5% (many diffs)
34 human 4915 NTRK2 neurotrophic receptor tyros... NM_001291937.1 55.7% 54.6% (many diffs)
35 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369546.1 55.7% 54.6% (many diffs)
36 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369550.1 38.3% 37.5% (many diffs)
37 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369551.1 38.3% 37.5% (many diffs)
38 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369552.1 38.3% 37.5% (many diffs)
39 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... NM_001025074.2 87.5% 93.9% (many diffs)
40 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... NM_001282961.1 87.5% 93.9% (many diffs)
41 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... XM_006517149.3 87.5% 93.9% (many diffs)
42 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... XM_017315419.1 87.5% 93.9% (many diffs)
43 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... XM_006517150.3 56.3% 58.3% (many diffs)
44 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... XM_006517151.3 51.3% 51% (many diffs)
45 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... NM_008745.3 49.7% 50.5% (many diffs)
46 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... XM_006517152.3 49.7% 50.5% (many diffs)
47 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... XM_017315420.1 49.7% 50.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2535
ORF length:
2466
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcaccat gtcgtcctgg ataaggtggc atggacccgc catggcgcgg ctctggggct
121tctgctggct ggttgtgggc ttctggaggg ccgctttcgc ctgtcccacg tcctgcaaat
181gcagtgcctc tcggatctgg tgcagcgacc cttctcctgg catcgtggca tttccgagat
241tggagcctaa cagtgtagat cctgagaaca tcaccgaaat tttcatcgca aaccagaaaa
301ggttagaaat catcaacgaa gatgatgttg aagcttatgt gggactgaga aatctgacaa
361ttgtggattc tggattaaaa tttgtggctc ataaagcatt tctgaaaaac agcaacctgc
421agcacatcaa ttttacccga aacaaactga cgagtttgtc taggaaacat ttccgtcacc
481ttgacttgtc tgaactgatc ctggtgggca atccatttac atgctcctgt gacattatgt
541ggatcaagac tctccaagag gctaaatcca gtccagacac tcaggatttg tactgcctga
601atgaaagcag caagaatatt cccctggcaa acctgcagat acccaattgt ggtttgccat
661ctgcaaatct ggccgcacct aacctcactg tggaggaagg aaagtctatc acattatcct
721gtagtgtggc aggtgatccg gttcctaata tgtattggga tgttggtaac ctggtttcca
781aacatatgaa tgaaacaagc cacacacagg gctccttaag gataactaac atttcatccg
841atgacagtgg gaagcagatc tcttgtgtgg cggaaaatct tgtaggagaa gatcaagatt
901ctgtcaacct cactgtgcat tttgcaccaa ctatcacatt tctcgaatct ccaacctcag
961accaccactg gtgcattcca ttcactgtga aaggcaaccc caaaccagcg cttcagtggt
1021tctataacgg ggcaatattg aatgagtcca aatacatctg tactaaaata catgttacca
1081atcacacgga gtaccacggc tgcctccagc tggataatcc cactcacatg aacaatgggg
1141actacactct aatagccaag aatgagtatg ggaaggatga gaaacagatt tctgctcact
1201tcatgggctg gcctggaatt gacgatggtg caaacccaaa ttatcctgat gtaatttatg
1261aagattatgg aactgcagcg aatgacatcg gggacaccac gaacagaagt aatgaaatcc
1321cttccacaga cgtcactgat aaaaccggtc gggaacatct ctcggtctat gctgtggtgg
1381tgattgcgtc tgtggtggga ttttgccttt tggtaatgct gtttctgctt aagttggcaa
1441gacactccaa gtttggcatg aaaggcccag cctccgttat cagcaatgat gatgactctg
1501ccagcccact ccatcacatc tccaatggga gtaacactcc atcttcttcg gaaggtggcc
1561cagatgctgt cattattgga atgaccaaga tccctgtcat tgaaaatccc cagtactttg
1621gcatcaccaa cagtcagctc aagccagaca catttgttca gcacatcaag cgacataaca
1681ttgttctgaa aagggagcta ggcgaaggag cctttggaaa agtgttccta gctgaatgct
1741ataacctctg tcctgagcag gacaagatct tggtggcagt gaagaccctg aaggatgcca
1801gtgacaatgc acgcaaggac ttccaccgtg aggccgagct cctgaccaac ctccagcatg
1861agcacatcgt caagttctat ggcgtctgcg tggagggcga ccccctcatc atggtctttg
1921agtacatgaa gcatggggac ctcaacaagt tcctcagggc acacggccct gatgccgtgc
1981tgatggctga gggcaacccg cccacggaac tgacgcagtc gcagatgctg catatagccc
2041agcagatcgc cgcgggcatg gtctacctgg cgtcccagca cttcgtgcac cgcgatttgg
2101ccaccaggaa ctgcctggtc ggggagaact tgctggtgaa aatcggggac tttgggatgt
2161cccgggacgt gtacagcact gactactaca gggtcggtgg ccacacaatg ctgcccattc
2221gctggatgcc tccagagagc atcatgtaca ggaaattcac gacggaaagc gacgtctgga
2281gcctgggggt cgtgttgtgg gagattttca cctatggcaa acagccctgg taccagctgt
2341caaacaatga ggtgatagag tgtatcactc agggccgagt cctgcagcga ccccgcacgt
2401gcccccagga ggtgtatgag ctgatgctgg ggtgctggca gcgagagccc cacatgagga
2461agaacatcaa gggcatccat accctccttc agaacttggc caaggcatct ccggtctacc
2521tggacattct aggcttgcca actttcttgt acaaagttgg cattataaga aagcattgct
2581tatcaatttg ttgcaacgaa c

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