Construct: ORF ccsbBroadEn_14772

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013128.1_s300c1, BRDN0000457224
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PMS2 (5395)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_000535.7 99.8% 99.7% 780C>G;1621A>G;1866G>A
2 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322014.2 98.6% 98.5% (many diffs)
3 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322006.2 93.8% 93.7% (many diffs)
4 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322015.2 87.7% 86.2% (many diffs)
5 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322007.1 87.5% 86.5% (many diffs)
6 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322008.2 87.5% 86.5% (many diffs)
7 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322003.2 84.2% 84.1% (many diffs)
8 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322004.2 84.2% 84.1% (many diffs)
9 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322005.2 84.2% 84.1% (many diffs)
10 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322009.2 83.1% 83% (many diffs)
11 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322010.2 78.1% 78% (many diffs)
12 human 5395 PMS2 PMS1 homolog 2, mismatch re... XM_024446800.1 78.1% 78% (many diffs)
13 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322013.2 77.7% 77.6% (many diffs)
14 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322011.2 63.8% 63.6% 0_1ins933;688A>G;933G>A
15 human 5395 PMS2 PMS1 homolog 2, mismatch re... NM_001322012.2 63.8% 63.6% 0_1ins933;688A>G;933G>A
16 human 5395 PMS2 PMS1 homolog 2, mismatch re... XM_006715744.4 63.8% 63.6% 0_1ins933;688A>G;933G>A
17 human 5395 PMS2 PMS1 homolog 2, mismatch re... XM_017012342.2 63.8% 63.6% 0_1ins933;688A>G;933G>A
18 human 441194 PMS2CL PMS2 C-terminal like pseudo... NR_002217.1 53.4% (many diffs)
19 human 5395 PMS2 PMS1 homolog 2, mismatch re... NR_136154.1 49.2% (many diffs)
20 human 5382 PMS2P4 PMS1 homolog 2, mismatch re... NR_046299.1 21.8% (many diffs)
21 human 100101440 PMS2P7 PMS1 homolog 2, mismatch re... NR_130940.1 20.3% (many diffs)
22 human 5380 PMS2P2 PMS1 homolog 2, mismatch re... NR_003614.3 19.8% (many diffs)
23 human 5382 PMS2P4 PMS1 homolog 2, mismatch re... NR_022007.2 18.8% (many diffs)
24 mouse 18861 Pms2 postmeiotic segregation inc... XR_001784638.1 44.4% (many diffs)
25 mouse 18861 Pms2 postmeiotic segregation inc... XR_001784639.1 44% (many diffs)
26 mouse 18861 Pms2 postmeiotic segregation inc... XM_017320714.1 37% 37.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2655
ORF length:
2586
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAGCGAGCT GAGAGCTCGA GTACAGAACC TGCTAAGGCC ATCAAACCTA
121TTGATCGGAA GTCAGTCCAT CAGATTTGCT CTGGGCAGGT GGTACTGAGT CTAAGCACTG
181CGGTAAAGGA GTTAGTAGAA AACAGTCTGG ATGCTGGTGC CACTAATATT GATCTAAAGC
241TTAAGGACTA TGGAGTGGAT CTTATTGAAG TTTCAGACAA TGGATGTGGG GTAGAAGAAG
301AAAACTTCGA AGGCTTAACT CTGAAACATC ACACATCTAA GATTCAAGAG TTTGCCGACC
361TAACTCAGGT TGAAACTTTT GGCTTTCGGG GGGAAGCTCT GAGCTCACTT TGTGCACTGA
421GCGATGTCAC CATTTCTACC TGCCACGCAT CGGCGAAGGT TGGAACTCGA CTGATGTTTG
481ATCACAATGG GAAAATTATC CAGAAAACCC CCTACCCCCG CCCCAGAGGG ACCACAGTCA
541GCGTGCAGCA GTTATTTTCC ACACTACCTG TGCGCCATAA GGAATTTCAA AGGAATATTA
601AGAAGGAGTA TGCCAAAATG GTCCAGGTCT TACATGCATA CTGTATCATT TCAGCAGGCA
661TCCGTGTAAG TTGCACCAAT CAGCTTGGAC AAGGAAAACG ACAGCCTGTG GTATGCACAG
721GTGGAAGCCC CAGCATAAAG GAAAATATCG GCTCTGTGTT TGGGCAGAAG CAGTTGCAAA
781GCCTCATTCC TTTTGTTCAG CTGCCCCCTA GTGACTCCGT GTGTGAAGAG TACGGTTTGA
841GCTGTTCGGA TGCTCTGCAT AATCTTTTTT ACATCTCAGG TTTCATTTCA CAATGCACGC
901ATGGAGTTGG AAGGAGTTCA ACAGACAGAC AGTTTTTCTT TATCAACCGG CGGCCTTGTG
961ACCCAGCAAA GGTCTGCAGA CTCGTGAATG AGGTCTACCA CATGTATAAT CGACACCAGT
1021ATCCATTTGT TGTTCTTAAC ATTTCTGTTG ATTCAGAATG CGTTGATATC AATGTTACTC
1081CAGATAAAAG GCAAATTTTG CTACAAGAGG AAAAGCTTTT GTTGGCAGTT TTAAAGACCT
1141CTTTGATAGG AATGTTTGAT AGTGATGTCA ACAAGCTAAA TGTCAGTCAG CAGCCACTGC
1201TGGATGTTGA AGGTAACTTA ATAAAAATGC ATGCAGCGGA TTTGGAAAAG CCCATGGTAG
1261AAAAGCAGGA TCAATCCCCT TCATTAAGGA CTGGAGAAGA AAAAAAAGAC GTGTCCATTT
1321CCAGACTGCG AGAGGCCTTT TCTCTTCGTC ACACAACAGA GAACAAGCCT CACAGCCCAA
1381AGACTCCAGA ACCAAGAAGG AGCCCTCTAG GACAGAAAAG GGGTATGCTG TCTTCTAGCA
1441CTTCAGGTGC CATCTCTGAC AAAGGCGTCC TGAGACCTCA GAAAGAGGCA GTGAGTTCCA
1501GTCACGGACC CAGTGACCCT ACGGACAGAG CGGAGGTGGA GAAGGACTCG GGGCACGGCA
1561GCACTTCCGT GGATTCTGAG GGGTTCAGCA TCCCAGACAC GGGCAGTCAC TGCAGCAGCG
1621AGTATGCGGC CAGCTCCCCA GGGGACAGGG GCTCGCAGGA ACATGTGGAC TCTCAGGAGA
1681AAGCGCCTGA AACTGACGAC TCTTTTTCAG ATGTGGACTG CCATTCAAAC CAGGAAGATA
1741CCGGATGTAA ATTTCGAGTT TTGCCTCAGC CAACTAATCT CGCAACCCCA AACACAAAGC
1801GTTTTAAAAA AGAAGAAATT CTTTCCAGTT CTGACATTTG TCAAAAGTTA GTAAATACTC
1861AGGACATGTC AGCCTCTCAG GTTGATGTAG CTGTGAAAAT TAATAAGAAA GTTGTGCCCC
1921TGGACTTTTC TATAAGTTCT TTAGCTAAAC GAATAAAGCA GTTACATCAT GAAGCACAGC
1981AAAGTGAAGG GGAACAGAAT TACAGGAAGT TTAGGGCAAA GATTTGTCCT GGAGAAAATC
2041AAGCAGCCGA AGATGAACTA AGAAAAGAGA TAAGTAAAAC GATGTTTGCA GAAATGGAAA
2101TCATTGGTCA GTTTAACCTG GGATTTATAA TAACCAAACT GAATGAGGAT ATCTTCATAG
2161TGGACCAGCA TGCCACGGAC GAGAAGTATA ACTTCGAGAT GCTGCAGCAG CACACCGTGC
2221TCCAGGGGCA GAGGCTCATA GCACCTCAGA CTCTCAACTT AACTGCTGTT AATGAAGCTG
2281TTCTGATAGA AAATCTGGAA ATATTTAGAA AGAATGGCTT TGATTTTGTT ATCGATGAAA
2341ATGCTCCAGT CACTGAAAGG GCTAAACTGA TTTCCTTGCC AACTAGTAAA AACTGGACCT
2401TCGGACCCCA GGACGTCGAT GAACTGATCT TCATGCTGAG CGACAGCCCT GGGGTCATGT
2461GCCGgccttc ccgagtcaag cagatgtttg cctccagagc ctgccggaag tcggtgatga
2521ttgggactgc tcttaacaca agcgagatga agaaactgat cacccacatg ggggagatgg
2581accacccctg gaactgtccc catggaaggc caaccatgag acacatcgcc aacctgggtg
2641tcatttctca gaacttgcca actttcttgt acaaagttgg cattataaga aagcattgct
2701tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)