Transcript: Human NR_003614.3

Homo sapiens PMS1 homolog 2, mismatch repair system component pseudogene 2 (PMS2P2), non-coding RNA.

Source:
NCBI, updated 2019-01-13
Taxon:
Homo sapiens (human)
Gene:
PMS2P2 (5380)
Length:
639
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_003614.3
NBCI Gene record:
PMS2P2 (5380)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_003614.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000118014 GTCAGCGTGAAGCAGTTATTT pLKO.1 399 3UTR 100% 15.000 7.500 Y PMS2P5 n/a
2 TRCN0000256787 AGTCAGCGTGAAGCAGTTATT pLKO_005 398 3UTR 100% 13.200 6.600 Y PMS2P9 n/a
3 TRCN0000256790 CTGTGCGCCATAAGGAATTTC pLKO_005 430 3UTR 100% 13.200 6.600 Y PMS2P9 n/a
4 TRCN0000256789 GGACAACGTGATCACTGTATT pLKO_005 507 3UTR 100% 13.200 6.600 Y PMS2P9 n/a
5 TRCN0000256786 TTCTAGATGATCTGCACAAAT pLKO_005 555 3UTR 100% 13.200 6.600 Y PMS2P9 n/a
6 TRCN0000118015 AGGCTTAATGATGTCACCATT pLKO.1 274 3UTR 100% 4.950 2.475 Y PMS2P5 n/a
7 TRCN0000118013 CCATTTCTACCTGCCACGTAT pLKO.1 290 3UTR 100% 4.950 2.475 Y PMS2P5 n/a
8 TRCN0000107284 CGGAAGTCAGTCCATCAGATT pLKO.1 89 3UTR 100% 4.950 2.475 Y PMS2P3 n/a
9 TRCN0000118012 CCATAAGGAATTTCAAAGGAA pLKO.1 437 3UTR 100% 3.000 1.500 Y PMS2P5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_003614.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11040 pDONR223 100% 34.8% None (many diffs) n/a
2 ccsbBroad304_11040 pLX_304 0% 34.8% V5 (many diffs) n/a
3 TRCN0000477902 TCACAGCCGGGTCATAGTAAATTT pLX_317 76.4% 34.8% V5 (many diffs) n/a
4 ccsbBroadEn_14772 pDONR223 92.2% 19.8% None (many diffs) n/a
5 ccsbBroad304_14772 pLX_304 0% 19.8% V5 (many diffs) n/a
6 TRCN0000480058 GCTATCTCATTGCACGAGGCGAAG pLX_317 12.6% 19.8% V5 (many diffs) n/a
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