Construct: ORF ccsbBroadEn_14914
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018825.1_s300c1, BRDN0000458121
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDKL1 (8814)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8814 | CDKL1 | cyclin dependent kinase like 1 | NM_001367064.1 | 99.1% | 97.6% | (many diffs) |
| 2 | human | 8814 | CDKL1 | cyclin dependent kinase like 1 | NM_001367065.1 | 99.1% | 97.6% | (many diffs) |
| 3 | human | 8814 | CDKL1 | cyclin dependent kinase like 1 | XM_017021730.1 | 99.1% | 97.6% | (many diffs) |
| 4 | human | 8814 | CDKL1 | cyclin dependent kinase like 1 | NM_001282236.2 | 89.8% | 86.3% | (many diffs) |
| 5 | human | 8814 | CDKL1 | cyclin dependent kinase like 1 | XM_017021732.1 | 89.6% | 86.4% | (many diffs) |
| 6 | human | 8814 | CDKL1 | cyclin dependent kinase like 1 | NM_004196.5 | 83.3% | 82.1% | (many diffs) |
| 7 | human | 8814 | CDKL1 | cyclin dependent kinase like 1 | XM_005268157.3 | 83.3% | 82.1% | (many diffs) |
| 8 | human | 8814 | CDKL1 | cyclin dependent kinase like 1 | XM_011537276.1 | 68.7% | 67.8% | (many diffs) |
| 9 | human | 8814 | CDKL1 | cyclin dependent kinase like 1 | XM_005268160.4 | 51.3% | 50% | (many diffs) |
| 10 | human | 8814 | CDKL1 | cyclin dependent kinase like 1 | XR_943549.2 | 44.3% | (many diffs) | |
| 11 | human | 8814 | CDKL1 | cyclin dependent kinase like 1 | XR_001750577.2 | 32.6% | (many diffs) | |
| 12 | mouse | 71091 | Cdkl1 | cyclin-dependent kinase-lik... | NM_183294.2 | 73.2% | 77.9% | (many diffs) |
| 13 | mouse | 71091 | Cdkl1 | cyclin-dependent kinase-lik... | XM_017315202.1 | 73.2% | 77.9% | (many diffs) |
| 14 | mouse | 71091 | Cdkl1 | cyclin-dependent kinase-lik... | XM_017315203.1 | 73.2% | 77.9% | (many diffs) |
| 15 | mouse | 71091 | Cdkl1 | cyclin-dependent kinase-lik... | XM_011244176.2 | 53.9% | 45.9% | (many diffs) |
| 16 | mouse | 71091 | Cdkl1 | cyclin-dependent kinase-lik... | XM_011244177.2 | 53.9% | 45.9% | (many diffs) |
| 17 | mouse | 71091 | Cdkl1 | cyclin-dependent kinase-lik... | XM_011244178.2 | 53.9% | 45.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 1001
- ORF length:
- 903
- Sequence:
-
1 AAGGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG ATGGAGAAGT ATGAAAAAAT 121 TGGGAAAATT GGAGAAGGAT CCTATGGAGT TGTTTTCAAA TGTAGAAACA GGGACACGGG 181 TCAGATTGTG GCCATCAAGA AGTTTCNGGA ATCAGAAGAT GACCCTGTCA TAAANNAAAN 241 TNNCCTTCGG GAAATCCGAA TGCTCAAGCA ACTCAAGCAT CCCAACCTTG TTAACCTNCT 301 GGAAGTCTTC AGGAGGAAAC GGAGGCTTCA CCTGGTGTTT GAATATTGTG ACCACACAGT 361 TCTCCATGAG TTGGACAGAT ACCAAAGAGG GGTACCAGAA CATCTCGTGA AGAGCATAAC 421 TTGGCAGACA CTGCAAGCTG TAAATTTTTG CCATAAACAC AATTGCATAC ATAGAGACGT 481 GAAGCCAGAA AATATCCTCA TCACGAAACA TTCCGTGATT AAGCTTTGTG ACTTTGGATT 541 TGCTCGGCTT TTGACTGGAC CGAGTGACTA CTATACAGAC TACGTGGCTA CCAGGTGGTA 601 CCGCTCCCCT GAGCTGCTGG TGGGGGACAC GCAGTACGGC CCCCCGGTGG ATGTTTGGGC 661 AATTGGCTGT GTCTTTGCTG AGCTGCTGTC AGGAGTGCCT CTGTGGCCAG GAAAATCGGA 721 TGTGGATCAG CTGTATCTGA TTAGGAAGAC CTTGGGGGAT CTCATTCCTA GGCACCAGCA 781 AGTGTTTAGC ACGAATCAGT ACTTCAGTGG AGTGAAAATT CCAGACCCTG AAGATATGGN 841 ACCACTTGAA TTAAAATTCC CAAACATCTC TTATCCTGCC CTGGGGCTCC TAAAGTTGCA 901 GTACCTACCC CAGCTAACTG GCAGCAGCAT CCTTCCAGCT TTGGATAATA AGAAGTACTA 961 CTGTGATACC AAGAAACTTA ACTACCGTTT TCCAAACATT TTGCCAACTT TCTTGTACAA 1021 AGTTGGCATT ATAAGAAAGC ATTGCTTATC AATTTGTTGC AACGAACAGG TCACTATCAG 1081 TCAAAATAAA ATCATTATTG CCATCCAGCT AGCCCGA