Construct: ORF ccsbBroadEn_15154
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018886.1_s300c1, BRDN0000458182
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- PIP4K2C (79837)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79837 | PIP4K2C | phosphatidylinositol-5-phos... | NM_001146258.2 | 98.4% | 60.6% | (many diffs) |
| 2 | human | 79837 | PIP4K2C | phosphatidylinositol-5-phos... | NM_024779.5 | 98.4% | 60.6% | (many diffs) |
| 3 | human | 79837 | PIP4K2C | phosphatidylinositol-5-phos... | XM_005269152.3 | 95.4% | 57.5% | (many diffs) |
| 4 | human | 79837 | PIP4K2C | phosphatidylinositol-5-phos... | NM_001146259.2 | 94.2% | 56.3% | (many diffs) |
| 5 | human | 79837 | PIP4K2C | phosphatidylinositol-5-phos... | NM_001146260.2 | 87.5% | 50.4% | (many diffs) |
| 6 | human | 79837 | PIP4K2C | phosphatidylinositol-5-phos... | XM_017019973.2 | 58.6% | 21.3% | (many diffs) |
| 7 | human | 79837 | PIP4K2C | phosphatidylinositol-5-phos... | XM_011538747.2 | 56.5% | 83.8% | (many diffs) |
| 8 | mouse | 117150 | Pip4k2c | phosphatidylinositol-5-phos... | NM_054097.3 | 88.7% | 58% | (many diffs) |
| 9 | mouse | 117150 | Pip4k2c | phosphatidylinositol-5-phos... | XM_017313768.1 | 88.7% | 58% | (many diffs) |
| 10 | mouse | 117150 | Pip4k2c | phosphatidylinositol-5-phos... | XM_011243289.2 | 81.1% | 57.3% | (many diffs) |
| 11 | mouse | 117150 | Pip4k2c | phosphatidylinositol-5-phos... | XM_006513120.2 | 78% | 42.4% | (many diffs) |
| 12 | mouse | 117150 | Pip4k2c | phosphatidylinositol-5-phos... | XM_006513121.3 | 78% | 42.4% | (many diffs) |
| 13 | mouse | 117150 | Pip4k2c | phosphatidylinositol-5-phos... | XM_011243288.2 | 71.7% | 41.9% | (many diffs) |
| 14 | mouse | 117150 | Pip4k2c | phosphatidylinositol-5-phos... | XR_871695.2 | 34.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 99
- ORF end:
- 918
- ORF length:
- 819
- Sequence:
-
1 ATATGATTTT ATTTTGACTG ATAGTGACCT GTTCGTTGCA ACAAATTGAT GAGCAATGCT 61 TTTTTATAAT GCCAACTTTG TACAAAAAAG TTGGCACCAT GGCGTCCTCC TCGGTCCCAC 121 CAGCCACGGT ATCGGCGGCG ACAGCAGGCC CCGGCCCAGG TTTCGGCTTC GCCTCCAAGA 181 CCAAGAAGAA GCATTTCGTG CAGCAGAAGG TGAAGGTGTT CCGGGCGGCC GACCCGCTGG 241 TGGGTGTGTT CCTGTGGGGC GTAGCCCACT CGATCAATGA GCTCAGCCAG GTGCCTCCCC 301 CGGTGATGCT GCTGCCAGAT GACTTTAAGG CCAGCTCCAA GATCAAGGTC AACAATCACC 361 TTTTCCACAG GGAAAATCTG CCCAGTCATT TCAAGTTCAA GGAGTATTGT CCCCAGGTCT 421 TCAGGAACCT CCGTGATCGA TTTGGCATTG ATGACCAAGA TTACTTGGTG TCCCTTACCC 481 GAAACCCCCC CAGCGAAAGT GAAGGCAGTG ATGGTCGCTT CCTTATCTCC TACGATCGGA 541 CTCTGGTCAT CAAAGAAGTA TCCAGTGAGN ACATTGNTGA CATNCATAGC AACNTNNCCA 601 ACTATCACCA GTACATTGTG AAGTGCCATG GCAACACGCN TNTGCCCCAG TTCNTGGGGA 661 TGTACCGAGT CAGTGTGGAC AACGAAGACA GCTACATGCT TGTGATGCGC AATATGTTTA 721 GCCACCGTCT TCCTGTGCAC AGGAAGTATG ACCTCAAGGG TTCCCTAGTG TCCCGGGAAG 781 CCAGCGATAA GGAAAAGGTT AAAGAATTGC CCACCCTTAA NGATATGGAC TTTCTCAACA 841 AGAACCAGAA AGTATATATT GGTGANNNGN AGAAGAAAAT ATTTCTGGAG AAGCTGAAGA 901 AGNNGATGTG GAGTTTCTAG TGCAGCTGAA GATCATGGAC TACAGCCTTC TGCTAGGCAT 961 CCACGACATC ATTCGGGGCT CTGAACCAGA GGAGGAAGCG CCCGTGCGGG AGGATGAGTC 1021 AGAGGTGGAT GGGGACTGCA GCCTGACTGG ACCTCCTGCT CTGGTGGGCT CCTATGGCAC 1081 CTCCCCAGAG GGTATCGGAG GCTACATCCA TTCCCATCGG CCCCTGGGCC CAGGAGAGTT 1141 TGAGTCCTTC ATTGATGTCT ATGCCATCCG GAGTGCTGAA GGAGCCCCCC AGAAGGAGGT 1201 CTACTTCATG GGCCTCATTG ATATCCTTAC ACAGTATGAT GCCAAGAAGA AAGCAGCTCA 1261 TGCAGCCAAA ACTGTCAAGC ATGGGGCTGG GGCAGAGATC TCTACTGTCC ATCCGGAGCA 1321 GTATGCTAAG CGATTCCTGG ATTTTATTAC CAACATCTTT GCCTTGCCAA CTTTCTTGTA 1381 CAAAGTTGGC ATTATAAGAA AGCATTGCTT ATCAATTTGT TGCAACGAAC AGGTCACTAT 1441 CAGTCAAAAT AAAATCATTA TTGCCATCCA GGCTGAATCC CCCCTA