Construct: ORF ccsbBroadEn_15255
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018847.1_s300c1, BRDN0000458143
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- MPP7 (143098)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 143098 | MPP7 | membrane palmitoylated prot... | NM_001318170.2 | 99.7% | 42.5% | (many diffs) |
| 2 | human | 143098 | MPP7 | membrane palmitoylated prot... | NM_173496.5 | 99.7% | 42.5% | (many diffs) |
| 3 | human | 143098 | MPP7 | membrane palmitoylated prot... | XM_011519337.2 | 99.7% | 42.5% | (many diffs) |
| 4 | human | 143098 | MPP7 | membrane palmitoylated prot... | XM_017015742.1 | 99.4% | 42.1% | (many diffs) |
| 5 | human | 143098 | MPP7 | membrane palmitoylated prot... | XM_017015741.1 | 83.2% | 30.2% | (many diffs) |
| 6 | human | 143098 | MPP7 | membrane palmitoylated prot... | XM_011519338.2 | 78% | 20.8% | (many diffs) |
| 7 | human | 143098 | MPP7 | membrane palmitoylated prot... | XM_005252369.3 | 55.1% | 77% | 732_733insA;954_954delCins775 |
| 8 | human | 143098 | MPP7 | membrane palmitoylated prot... | XM_017015743.2 | 44.6% | 48.9% | (many diffs) |
| 9 | human | 143098 | MPP7 | membrane palmitoylated prot... | NR_134517.2 | 32.7% | (many diffs) | |
| 10 | human | 143098 | MPP7 | membrane palmitoylated prot... | NR_134518.2 | 31.7% | (many diffs) | |
| 11 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | NM_001081287.2 | 87.7% | 38.3% | (many diffs) |
| 12 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_006526326.3 | 87.7% | 38.3% | (many diffs) |
| 13 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_017318007.1 | 87.7% | 38.3% | (many diffs) |
| 14 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_006526325.3 | 84.2% | 36.8% | (many diffs) |
| 15 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_011247025.2 | 84.1% | 36.7% | (many diffs) |
| 16 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_011247026.2 | 84.1% | 36.7% | (many diffs) |
| 17 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_011247027.2 | 84.1% | 36.7% | (many diffs) |
| 18 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_017318006.1 | 84.1% | 36.7% | (many diffs) |
| 19 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_006526327.2 | 80.4% | 38.5% | (many diffs) |
| 20 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | NM_001161620.1 | 61.9% | 51.7% | (many diffs) |
| 21 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_006526330.3 | 52% | 61.2% | (many diffs) |
| 22 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_017318009.1 | 47.9% | 69.7% | (many diffs) |
| 23 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_017318010.1 | 44.7% | 74.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 845
- ORF length:
- 747
- Sequence:
-
1 CATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG CCAGCTTTGT CAACGGGATC 121 TGGGAGTGAC ACTGGTCTGT ATGAGCTGTT GGCTGCTCTG CCAGCCCAGC TGCAGCCACA 181 TGTGGATAGC CAGGAAGACC TGACCTTCCT CTGGGATATG TTTGGTGAAA AAAGCCTGCA 241 TTCATTGGTA AAGATTCATG AAAAACTACA CTACTATGAG AAGCAGAGTC CGGTGCCCAT 301 TCTCCATGGT GCGGCGGCCT TGGCCGATGA TCTGGCCGAA GAGCTTCAGA ACAAGCCATT 361 AAACAGTGAG ATCAGAGAGC TGTTGAAACT ACTGTCAAAA CCCAATGTGA AGGCTTTGCT 421 CTCTGTACAT GATACTGTGG CTCAGAAGAA TTACGACCCA GTGTTGCCTC CTATGCCTGA 481 AGATATTGAC GATGAGGAAG ACTCAGTAAA AATAATCCGT CTGGTCAAAA ATAGAGAACC 541 ACTGGGAGCT ACCATTAAGA AGGATGAACA GACCGGGGCG ATCATTGTGG CCAGAATCAT 601 GAGAGGAGGA GCTGCAGATA GAAGTGGTCT TATTCATGTT GGTGATGAAC TTAGGGAAGT 661 CAACGGGATA CCAGTGGAGG ATAAAAGGCC TGAGGAAATA ATACAGATTT TGGCTCAGTC 721 TCAGGGAGCA ATTACATTTA AGATTATACC CGGCAGCAAA GAGGAGACAC CATCAAAAGA 781 AGGCAAGATG TTTATCAAAG CCCTCTTTGA CTATAATCCT AATGAGGATA AAGGCAATTC 841 CATGtaagga agctgggctt tctttcaaaa agggagatat tcttcagatt atgagccaag 901 atgatgcaac ttggtggcaa gcgaaacacg aagctgatgc caaccccagg gcaggcttga 961 tcccctcaaa gcatttccag gaaaggagat tggctttgag acgaccagaa atattggttc 1021 agcccctgaa agtttccaac aggaaatcat ctggttttag aagaagATGT CGTCTTAGTA 1081 GAAAAGATAA GAAAACAAAT AAATCCATGT ATGAATGCAA GAAGAGTGAT CAGTACGACA 1141 CAGCTGACGT ACCCACATAC GAAGAAGTGA CACCGTATCG GCGACAAACT AATGAAAAAT 1201 ACAGACTCGT TGTCTTGGTT GGTCCCGTGG GAGTAGGGCT GAATGAACTG AAACGAAAGC 1261 TGCTGATCAG TGACACCCAG CACTATGGCG TGACAGTGCC CCATACCACC AGAGCAAGAA 1321 GAAGCCAGGA GAGTGATGGT GTTGAATACA TTTTCATTTC CAAGCATTTG TTTGAGACAG 1381 ATGTACAAAA TAACAAGTTT ATTGAATATG GAGAATATAA AAACAACTAC TACGGCACAA 1441 GTATAGACTC AGTTCGGTCT GTCCTTGCTA AAAACAAAGT TTGTTTGTTG GATGTTCAGC 1501 CTCATACAGT GAAGCATTTA AGGACACTAG AATTTAAGCC CTATGTGATA TTTATAAAGC 1561 CTCCATCAAT AGAGCGTTTG AGAGAAACAA GAAAAAATGC AAAGATTATT TCAAGCAGAG 1621 ATGACCAAGG TGCTGCAAAA CCCTTCACAG AAGAAGATTT TCAAGAAATG ATTAAATCTG 1681 CACAGATAAT GGAAAGTCAA TATGGTCATC TTTTTGACAA AATTATAATA AATGATGACC 1741 TCACTGTGGC ATTCAATGAG CTCAAAACAA CTTTTGACAA ATTAGAGACA GAGACCCATT 1801 GGGTGCCAGT GAGCTGGTTA CATTCATTGC CAACTTTCTT GTACAAAGTT GGCATTATAA 1861 GAAAGCATTG CTTATCAATT TGTTGCAACG AACAGGTCAC TATCAGTCAA AATAAAATCA 1921 TTATTGCCAT CCAGCTGATC CCGGT