Construct: ORF ccsbBroadEn_15279
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001065.1_s300c1, BRDN0000389524
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- ZNF679 (168417)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 168417 | ZNF679 | zinc finger protein 679 | NM_153363.3 | 99.3% | 58.8% | (many diffs) |
| 2 | human | 168417 | ZNF679 | zinc finger protein 679 | XM_017011797.1 | 99.3% | 58.8% | (many diffs) |
| 3 | human | 730291 | ZNF735 | zinc finger protein 735 | NM_001159524.1 | 90.9% | 47.3% | (many diffs) |
| 4 | human | 441234 | ZNF716 | zinc finger protein 716 | NM_001159279.1 | 77.1% | 42.4% | (many diffs) |
| 5 | human | 90827 | ZNF479 | zinc finger protein 479 | NM_001370129.1 | 69.8% | 38.3% | (many diffs) |
| 6 | human | 90827 | ZNF479 | zinc finger protein 479 | NM_033273.2 | 69.8% | 38.3% | (many diffs) |
| 7 | human | 90827 | ZNF479 | zinc finger protein 479 | XM_011515604.3 | 69.8% | 38.3% | (many diffs) |
| 8 | human | 90827 | ZNF479 | zinc finger protein 479 | XM_011515608.3 | 69.8% | 38.3% | (many diffs) |
| 9 | human | 90827 | ZNF479 | zinc finger protein 479 | XM_011515609.2 | 67.8% | 36% | (many diffs) |
| 10 | human | 90827 | ZNF479 | zinc finger protein 479 | XM_011515610.2 | 62.1% | 30.9% | (many diffs) |
| 11 | human | 90827 | ZNF479 | zinc finger protein 479 | XM_011515611.2 | 62.1% | 30.9% | (many diffs) |
| 12 | human | 90827 | ZNF479 | zinc finger protein 479 | XM_017012778.1 | 62.1% | 30.9% | (many diffs) |
| 13 | human | 643955 | ZNF733P | zinc finger protein 733, ps... | NR_003952.1 | 54.8% | (many diffs) | |
| 14 | human | 100419780 | ZNF722P | zinc finger protein 722, ps... | NR_145488.1 | 34.5% | (many diffs) | |
| 15 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278665.2 | 18.9% | 30% | (many diffs) |
| 16 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256172.2 | 17% | 24.6% | (many diffs) |
| 17 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451521.1 | 16.5% | 25.5% | (many diffs) |
| 18 | human | 51427 | ZNF107 | zinc finger protein 107 | XM_024446791.1 | 16.3% | 24.6% | (many diffs) |
| 19 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001348689.2 | 16.3% | 25.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 795
- ORF length:
- 729
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TAAAAGACCG GGATCCCCTG GAAGCCGAGA AATGGGACTG TTGACATTCA 121 GAGATGTAGT CATAGAATTC TCTCTGGAGG AGTGGCAATG CCTGGATCAC GCTCAGCAGA 181 ATTTATATAG AGATGTGATG TTAGAGAACT ACAGAAACCT GGTCTCCCTG GGTATTGCTG 241 TCTCTAAGCC AGACTTGATC ACCTGTCTGG AGCAAAATAA AGAGCCTTGG AATATAAAGA 301 GAAATGAGAT GGTAACCAAA CACCCAGTTA TGTGTTCTCA TTTCACCCAA GACCTTCCGC 361 CAGAGCTAGG CATAAAAGAT TCACTCCAAA AAGTAATACC AAGAAGATAT GGAAAAAGTG 421 GACATGACAA TTTACAAGTA AAAACATGTA AAAGCATGGG TGAGTGTGAG GTGCAAAAAG 481 GAGGTTGTAA TGAAGTTAAC CAATGTTTGT CAACTACCCA AAACAAAATA TTTCAGACTC 541 ATAAATGTGT CAAAGTCTTC GGCAAATTTT CAAATTCCAA TAGACATAAG ACAAGACATA 601 CTGGAAAGAA ACATTTCAAA TGTAAAAAAT ATGGCAAATC ATTTTGCATG GTTTCACAAC 661 TACATCAACA TCAGATAATT CATACTAGGG AGAATTCCTA CCAATGTGAA GAATGCGGCA 721 AACCCTTCAA CTGCTCTTCA ACCCTTTCTA AACATAAAAG AATTCATACT GGAGAGAAAC 781 CCTACAAATG TGAATAatgt ggcaaagctt ttacctggtc ctcaaccctt actaaacata 841 ggagaattca tactggagaa aaaccctaca catgtgaaga atgtggccaa gcctttagcc 901 gctcctcaac acttgctaac cacaagagaa ttcatactgg agagaaacca tacacatgtg 961 aagaatgtgg caaagccttt agcttatcct catccctcac ttaccacaag agaattcata 1021 ctggagagaa accctacaca tgtgaaaaat gtggcaaagc ctttaactgc tcctcaaccc 1081 ttaagaaaca taagataatt catactggag agaaacccta caaatgtaaa gaatgtggga 1141 aagcctttgc cttctcctca actcttaata ctcataagag gattcatact ggagaggaac 1201 cctacaaatg tgaagaatgt gacaaagctt ttaagtggtc ctcaagtctt gctAAACATA 1261 AAAGAATTCA TACTGGAGAG AAACCCTACA AATGTGAATA CCCAACTTTC TTGTACAAAG 1321 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac