Construct: ORF ccsbBroadEn_15279

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001065.1_s300c1, BRDN0000389524
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
ZNF679 (168417)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 168417 ZNF679 zinc finger protein 679 NM_153363.3 99.3% 58.8% (many diffs)
2 human 168417 ZNF679 zinc finger protein 679 XM_017011797.1 99.3% 58.8% (many diffs)
3 human 730291 ZNF735 zinc finger protein 735 NM_001159524.1 90.9% 47.3% (many diffs)
4 human 441234 ZNF716 zinc finger protein 716 NM_001159279.1 77.1% 42.4% (many diffs)
5 human 90827 ZNF479 zinc finger protein 479 NM_001370129.1 69.8% 38.3% (many diffs)
6 human 90827 ZNF479 zinc finger protein 479 NM_033273.2 69.8% 38.3% (many diffs)
7 human 90827 ZNF479 zinc finger protein 479 XM_011515604.3 69.8% 38.3% (many diffs)
8 human 90827 ZNF479 zinc finger protein 479 XM_011515608.3 69.8% 38.3% (many diffs)
9 human 90827 ZNF479 zinc finger protein 479 XM_011515609.2 67.8% 36% (many diffs)
10 human 90827 ZNF479 zinc finger protein 479 XM_011515610.2 62.1% 30.9% (many diffs)
11 human 90827 ZNF479 zinc finger protein 479 XM_011515611.2 62.1% 30.9% (many diffs)
12 human 90827 ZNF479 zinc finger protein 479 XM_017012778.1 62.1% 30.9% (many diffs)
13 human 643955 ZNF733P zinc finger protein 733, ps... NR_003952.1 54.8% (many diffs)
14 human 100419780 ZNF722P zinc finger protein 722, ps... NR_145488.1 34.5% (many diffs)
15 human 9534 ZNF254 zinc finger protein 254 NM_001278665.2 18.9% 30% (many diffs)
16 human 7639 ZNF85 zinc finger protein 85 NM_001256172.2 17% 24.6% (many diffs)
17 human 440519 ZNF724 zinc finger protein 724 XM_024451521.1 16.5% 25.5% (many diffs)
18 human 51427 ZNF107 zinc finger protein 107 XM_024446791.1 16.3% 24.6% (many diffs)
19 human 730087 ZNF726 zinc finger protein 726 NM_001348689.2 16.3% 25.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
795
ORF length:
729
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TAAAAGACCG GGATCCCCTG GAAGCCGAGA AATGGGACTG TTGACATTCA
121GAGATGTAGT CATAGAATTC TCTCTGGAGG AGTGGCAATG CCTGGATCAC GCTCAGCAGA
181ATTTATATAG AGATGTGATG TTAGAGAACT ACAGAAACCT GGTCTCCCTG GGTATTGCTG
241TCTCTAAGCC AGACTTGATC ACCTGTCTGG AGCAAAATAA AGAGCCTTGG AATATAAAGA
301GAAATGAGAT GGTAACCAAA CACCCAGTTA TGTGTTCTCA TTTCACCCAA GACCTTCCGC
361CAGAGCTAGG CATAAAAGAT TCACTCCAAA AAGTAATACC AAGAAGATAT GGAAAAAGTG
421GACATGACAA TTTACAAGTA AAAACATGTA AAAGCATGGG TGAGTGTGAG GTGCAAAAAG
481GAGGTTGTAA TGAAGTTAAC CAATGTTTGT CAACTACCCA AAACAAAATA TTTCAGACTC
541ATAAATGTGT CAAAGTCTTC GGCAAATTTT CAAATTCCAA TAGACATAAG ACAAGACATA
601CTGGAAAGAA ACATTTCAAA TGTAAAAAAT ATGGCAAATC ATTTTGCATG GTTTCACAAC
661TACATCAACA TCAGATAATT CATACTAGGG AGAATTCCTA CCAATGTGAA GAATGCGGCA
721AACCCTTCAA CTGCTCTTCA ACCCTTTCTA AACATAAAAG AATTCATACT GGAGAGAAAC
781CCTACAAATG TGAATAatgt ggcaaagctt ttacctggtc ctcaaccctt actaaacata
841ggagaattca tactggagaa aaaccctaca catgtgaaga atgtggccaa gcctttagcc
901gctcctcaac acttgctaac cacaagagaa ttcatactgg agagaaacca tacacatgtg
961aagaatgtgg caaagccttt agcttatcct catccctcac ttaccacaag agaattcata
1021ctggagagaa accctacaca tgtgaaaaat gtggcaaagc ctttaactgc tcctcaaccc
1081ttaagaaaca taagataatt catactggag agaaacccta caaatgtaaa gaatgtggga
1141aagcctttgc cttctcctca actcttaata ctcataagag gattcatact ggagaggaac
1201cctacaaatg tgaagaatgt gacaaagctt ttaagtggtc ctcaagtctt gctAAACATA
1261AAAGAATTCA TACTGGAGAG AAACCCTACA AATGTGAATA CCCAACTTTC TTGTACAAAG
1321Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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