Construct: ORF ccsbBroadEn_15282
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010242.1_s300c1, BRDN0000394923
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NBPF11 (200030)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 200030 | NBPF11 | NBPF member 11 | XM_024453859.1 | 91.4% | 91.2% | (many diffs) |
| 2 | human | 102724250 | LOC102724250 | neuroblastoma breakpoint fa... | XM_017030107.2 | 86.8% | 83.9% | (many diffs) |
| 3 | human | 200030 | NBPF11 | NBPF member 11 | XR_002959662.1 | 81% | (many diffs) | |
| 4 | human | 200030 | NBPF11 | NBPF member 11 | XR_002959669.1 | 80.8% | (many diffs) | |
| 5 | human | 200030 | NBPF11 | NBPF member 11 | XR_002959670.1 | 77% | (many diffs) | |
| 6 | human | 200030 | NBPF11 | NBPF member 11 | XM_024453858.1 | 70.4% | 68.4% | (many diffs) |
| 7 | human | 200030 | NBPF11 | NBPF member 11 | NM_001101663.4 | 68.9% | 67% | (many diffs) |
| 8 | human | 200030 | NBPF11 | NBPF member 11 | NM_183372.6 | 64.9% | 63.1% | (many diffs) |
| 9 | human | 400818 | NBPF9 | NBPF member 9 | NM_001037675.3 | 62.3% | 59.3% | (many diffs) |
| 10 | human | 102724250 | LOC102724250 | neuroblastoma breakpoint fa... | XM_024452498.1 | 62% | 59.1% | (many diffs) |
| 11 | human | 728841 | NBPF8 | NBPF member 8 | NM_001037501.3 | 61.9% | 58.9% | (many diffs) |
| 12 | human | 400818 | NBPF9 | NBPF member 9 | NM_001277444.1 | 52.8% | 50.3% | (many diffs) |
| 13 | human | 149013 | NBPF12 | NBPF member 12 | XM_024453443.1 | 49.6% | 47.6% | (many diffs) |
| 14 | human | 55672 | NBPF1 | NBPF member 1 | NM_017940.6 | 47.9% | 45.5% | (many diffs) |
| 15 | human | 343505 | NBPF7 | NBPF member 7 | XM_017001186.1 | 45% | 35.3% | (many diffs) |
| 16 | human | 343505 | NBPF7 | NBPF member 7 | NM_001047980.2 | 44.4% | 35.4% | (many diffs) |
| 17 | human | 101060684 | NBPF26 | NBPF member 26 | NM_001351372.1 | 43.7% | 41.1% | (many diffs) |
| 18 | human | 149013 | NBPF12 | NBPF member 12 | NM_001278141.1 | 40.3% | 38.7% | (many diffs) |
| 19 | human | 84224 | NBPF3 | NBPF member 3 | XM_006710957.1 | 39.7% | 32.4% | (many diffs) |
| 20 | human | 84224 | NBPF3 | NBPF member 3 | NM_032264.5 | 39.5% | 31.6% | (many diffs) |
| 21 | human | 84224 | NBPF3 | NBPF member 3 | NM_001256416.3 | 38.5% | 31.4% | (many diffs) |
| 22 | human | 84224 | NBPF3 | NBPF member 3 | XM_017002500.1 | 35.3% | 30.3% | (many diffs) |
| 23 | human | 84224 | NBPF3 | NBPF member 3 | XM_017002501.1 | 35.3% | 30.3% | (many diffs) |
| 24 | human | 84224 | NBPF3 | NBPF member 3 | XM_017002502.1 | 35.3% | 30.3% | (many diffs) |
| 25 | human | 84224 | NBPF3 | NBPF member 3 | NM_001330381.2 | 35.3% | 29.6% | (many diffs) |
| 26 | human | 84224 | NBPF3 | NBPF member 3 | XM_006710958.1 | 35.3% | 29.6% | (many diffs) |
| 27 | human | 84224 | NBPF3 | NBPF member 3 | XM_006710959.2 | 35.3% | 29.6% | (many diffs) |
| 28 | human | 84224 | NBPF3 | NBPF member 3 | XM_011542276.1 | 35.3% | 29.6% | (many diffs) |
| 29 | human | 84224 | NBPF3 | NBPF member 3 | XM_011542277.1 | 35.3% | 29.6% | (many diffs) |
| 30 | human | 84224 | NBPF3 | NBPF member 3 | XM_011542278.1 | 35.3% | 29.6% | (many diffs) |
| 31 | human | 84224 | NBPF3 | NBPF member 3 | XM_011542281.1 | 35.3% | 29.6% | (many diffs) |
| 32 | human | 84224 | NBPF3 | NBPF member 3 | XM_017002499.2 | 35.3% | 29.6% | (many diffs) |
| 33 | human | 84224 | NBPF3 | NBPF member 3 | XM_024450188.1 | 35.3% | 29.6% | (many diffs) |
| 34 | human | 84224 | NBPF3 | NBPF member 3 | XM_024450190.1 | 35.3% | 29.6% | (many diffs) |
| 35 | human | 284565 | NBPF15 | NBPF member 15 | NM_001170755.2 | 33.9% | 31.5% | (many diffs) |
| 36 | human | 284565 | NBPF15 | NBPF member 15 | NM_173638.4 | 33.9% | 31.5% | (many diffs) |
| 37 | human | 84224 | NBPF3 | NBPF member 3 | NM_001256417.3 | 32.9% | 25.2% | (many diffs) |
| 38 | human | 200030 | NBPF11 | NBPF member 11 | NR_046188.4 | 31.7% | (many diffs) | |
| 39 | human | 101929780 | NBPF25P | NBPF member 25, pseudogene | NR_104217.1 | 30% | (many diffs) | |
| 40 | human | 200030 | NBPF11 | NBPF member 11 | NR_110864.2 | 29.8% | (many diffs) | |
| 41 | human | 728841 | NBPF8 | NBPF member 8 | NR_102405.2 | 23.2% | (many diffs) | |
| 42 | human | 728841 | NBPF8 | NBPF member 8 | NR_102404.2 | 22.4% | (many diffs) | |
| 43 | human | 25832 | NBPF14 | NBPF member 14 | NM_015383.2 | 20.7% | 19.6% | (many diffs) |
| 44 | human | 100132406 | NBPF10 | NBPF member 10 | NM_001039703.6 | 16.1% | 15.2% | (many diffs) |
| 45 | human | 100132406 | NBPF10 | NBPF member 10 | NM_001302371.3 | 15.4% | 14.5% | (many diffs) |
| 46 | human | 101060226 | NBPF19 | NBPF member 19 | NM_001351365.1 | 11.6% | 7.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1863
- ORF length:
- 1794
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTGGTATCA GCCGGCCCTT TGTCCAGCGA GAAGGCAGAG ATGAACATTC 121 TAGAAATCAA TGAGAAATTg cgcccccagt tggcagagaa caaacagcag ttcagaaacc 181 tcaaagagag atgttttcta actcaactgg ccggcttcct ggccaaccga cagaagaaat 241 acaagtatga agagtgtaaa gacctcataa aatttatgct gaggAATGAG CGACAGTTCA 301 AGGAGGAGAA GCTTGCAGAG CAGCTGAAGC AAGCTGAGGA GCTCAGGCAA TATAAAGTCC 361 TGGTTCACTC TCAGGAACGA GAGCTGACCC AGTTAAGGGA GAAGTTACGG GAAGGGAGAG 421 ATGCCTCCCG CTCATTGAAT GAGCATCTCC AGGCCCTCCT CACTCCGGAT GAGCCGGACA 481 AGTCCCAGGG GCAGGACCTC CAAGAACAGC TGGCTGAGGG GTGTAGACTG GCACAGCACC 541 TTGTCCAAAA GCTCAgccca gaaaatgacg aagatgagga tgaagatgtt caagttgagg 601 aggatgagaa agtactggaa tcatctgccc ccagggaggt gcagaaggct gaagagagca 661 aagtccctga ggactcactg gaggaatgtg ccatcacttg ttcaaatagc cacggccctt 721 gtgactccat ccagcctcac aagaacatca aaatcacatt tgaggaagac aaagtcaact 781 catctctggt tgtagacaga gaatcctctc atgatggatg tcaggatgct ctaaacattc 841 tcccagtccc tggccccacc tcttctgcca caaacgtcaC CATGGTGGTA TCAGCCGGCC 901 CTTTGTCCAG CGAGAAGGCA GAGATGAACA TTCTAGAAAT CAATGAGAAA TTGTGCCCCC 961 AGCTGGCAGA GAAGAAACAG CAGTTCAGAA GCCTCAAAGA GAAATGTTTT GTAACTCAAG 1021 TGGCCTGCTT CCTGGCCAAG CAGCAGAACA AATACAAATA TGAAGAGTGC AAAGACCTCA 1081 TAAAATCTAT GCTGAGGAAT GAGCGACAGT TCAAGGAGGA GAAGCTTGCA GAGCAGCTGA 1141 AGCAAGCTGA GGAGCTCAGG CAATATAAAG TCCTGGTTCA CTCTCAGGAA CGAGAGCTGA 1201 CCCAGTTAAG GGAGAAGTTA CGGGAAGGGA GAGATGCCTC CCGCTCATTG AATGAGCATC 1261 TCCAGGCCCT CCTCACTCCG GATGAGCCGG ACAAGTCCCA GGGGCAGGAC CTCCAAGAAC 1321 AGCTGGCTGA GGGGTGTAGA CTGGCACAGC ACCTTGTCCA AAAGCTCAGC CCAGAAAATG 1381 ATAACGATGA CGATGAAGAT GTTCAAGTTG AGGTGGCTGA GAAAGTGCAG AAATCGTCTT 1441 CCCCCAGGGA GATGCAGAAG GCTGAAGAAA AGGAAGTCCC TGAGGACTCA CTGGAGGAGT 1501 GTGCCATCAC TTGTTCAAAT AGCCATGGCC CTTATGACTC CAACCAGCCA CATAGAAAAA 1561 CCAAAATCAC ATTTGAGGAA GACAAAGTCG ACTCAACTCT CATTGGCTCA TCCTCTCATG 1621 TTGAATGGGA GGATGCTGTA CACATTATCC CAGAAAATGA AAGTGATGAT GAGGAAGAGG 1681 AAGAAAAAGG GCCAGTGTCT CCCAGGAATC TGCAGGAGTC TGAAGAGGAG GAAGTCCCCC 1741 AGGAGTCCTG GGATGAAGGT TATTCGACTC TCTCAATTCC TCCTGAAAGG TcatcggtGG 1801 GATCAAGTGA AAAAGGAGGA CCAAGAGGCA ACAGGTCCCA GGCTCAGCAG GGAGCTGCTG 1861 GATTGCCGAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1921 gcaacgaac