Construct: ORF ccsbBroadEn_15304
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006321.1_s300c1, BRDN0000392083
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PKD1P1 (339044)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 101059938 | NPIPA7 | nuclear pore complex intera... | XM_017022836.2 | 61.3% | 60.9% | (many diffs) |
| 2 | human | 101059938 | NPIPA7 | nuclear pore complex intera... | XM_017022840.2 | 61.3% | 60.9% | (many diffs) |
| 3 | human | 102724993 | LOC102724993 | nuclear pore complex-intera... | XM_017030214.2 | 60.4% | 59.3% | (many diffs) |
| 4 | human | 729978 | NPIPB2 | nuclear pore complex intera... | XM_024450429.1 | 55.3% | 48.3% | (many diffs) |
| 5 | human | 729978 | NPIPB2 | nuclear pore complex intera... | NM_001355514.1 | 49.9% | 43.4% | (many diffs) |
| 6 | human | 729978 | NPIPB2 | nuclear pore complex intera... | XM_024450428.1 | 49.9% | 43.4% | (many diffs) |
| 7 | human | 729978 | NPIPB2 | nuclear pore complex intera... | XM_024450431.1 | 49.9% | 43.4% | (many diffs) |
| 8 | human | 440348 | NPIPB15 | nuclear pore complex intera... | XM_011523501.2 | 43.9% | 38.4% | (many diffs) |
| 9 | human | 101059938 | NPIPA7 | nuclear pore complex intera... | NM_001282507.1 | 40.9% | 40.6% | (many diffs) |
| 10 | human | 101059953 | NPIPA8 | nuclear pore complex intera... | NM_001282511.2 | 40.9% | 40.6% | (many diffs) |
| 11 | human | 101059938 | NPIPA7 | nuclear pore complex intera... | XM_017022834.1 | 40.9% | 40.6% | (many diffs) |
| 12 | human | 101059938 | NPIPA7 | nuclear pore complex intera... | XM_017022835.1 | 40.9% | 40.6% | (many diffs) |
| 13 | human | 101059938 | NPIPA7 | nuclear pore complex intera... | XM_011522339.3 | 40.4% | 40.2% | (many diffs) |
| 14 | human | 102724993 | LOC102724993 | nuclear pore complex-intera... | XM_024452519.1 | 40.2% | 39.5% | (many diffs) |
| 15 | human | 101059938 | NPIPA7 | nuclear pore complex intera... | XM_017022833.2 | 39.6% | 39.3% | (many diffs) |
| 16 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022827.2 | 38.1% | 34.2% | (many diffs) |
| 17 | human | 101059938 | NPIPA7 | nuclear pore complex intera... | XM_005255735.5 | 38.1% | 37.8% | (many diffs) |
| 18 | human | 102724993 | LOC102724993 | nuclear pore complex-intera... | XM_017030211.2 | 37.5% | 36.8% | (many diffs) |
| 19 | human | 9284 | NPIPA1 | nuclear pore complex intera... | NM_006985.4 | 35.6% | 35.7% | (many diffs) |
| 20 | human | 642799 | NPIPA2 | nuclear pore complex intera... | NM_001277324.1 | 35.5% | 35.5% | (many diffs) |
| 21 | human | 642778 | NPIPA3 | nuclear pore complex intera... | NM_001277323.1 | 35.5% | 35.2% | (many diffs) |
| 22 | human | 100288332 | NPIPA5 | nuclear pore complex intera... | NM_001277325.2 | 35.5% | 34.9% | (many diffs) |
| 23 | human | 642799 | NPIPA2 | nuclear pore complex intera... | XM_024450388.1 | 35.2% | 35.1% | (many diffs) |
| 24 | human | 729978 | NPIPB2 | nuclear pore complex intera... | XM_024450424.1 | 35.1% | 30.2% | (many diffs) |
| 25 | human | 729978 | NPIPB2 | nuclear pore complex intera... | XM_024450425.1 | 35.1% | 30.2% | (many diffs) |
| 26 | human | 729978 | NPIPB2 | nuclear pore complex intera... | XM_024450426.1 | 35.1% | 30.2% | (many diffs) |
| 27 | human | 642778 | NPIPA3 | nuclear pore complex intera... | XM_011522580.2 | 35.1% | 34.8% | (many diffs) |
| 28 | human | 728734 | NPIPB8 | nuclear pore complex intera... | XM_024450418.1 | 33.8% | 30.3% | (many diffs) |
| 29 | human | 642799 | NPIPA2 | nuclear pore complex intera... | XM_024450385.1 | 33.8% | 33.7% | (many diffs) |
| 30 | human | 642799 | NPIPA2 | nuclear pore complex intera... | XM_024450386.1 | 33.8% | 33.7% | (many diffs) |
| 31 | human | 642778 | NPIPA3 | nuclear pore complex intera... | XM_017023554.1 | 33.7% | 33.5% | (many diffs) |
| 32 | human | 642778 | NPIPA3 | nuclear pore complex intera... | XM_024450379.1 | 33.7% | 33.5% | (many diffs) |
| 33 | human | 100288332 | NPIPA5 | nuclear pore complex intera... | XM_024450132.1 | 33.7% | 33.2% | (many diffs) |
| 34 | human | 642799 | NPIPA2 | nuclear pore complex intera... | XM_024450384.1 | 33.1% | 33% | (many diffs) |
| 35 | human | 642778 | NPIPA3 | nuclear pore complex intera... | XM_011522578.2 | 33% | 32.8% | (many diffs) |
| 36 | human | 642799 | NPIPA2 | nuclear pore complex intera... | XM_024450381.1 | 31.4% | 31.4% | (many diffs) |
| 37 | human | 642799 | NPIPA2 | nuclear pore complex intera... | XM_024450382.1 | 31.4% | 31.4% | (many diffs) |
| 38 | human | 642799 | NPIPA2 | nuclear pore complex intera... | XM_024450383.1 | 31.4% | 31.4% | (many diffs) |
| 39 | human | 642778 | NPIPA3 | nuclear pore complex intera... | XM_011522576.2 | 31.4% | 31.1% | (many diffs) |
| 40 | human | 642778 | NPIPA3 | nuclear pore complex intera... | XM_011522577.2 | 31.4% | 31.1% | (many diffs) |
| 41 | human | 642778 | NPIPA3 | nuclear pore complex intera... | XM_017023553.1 | 31.4% | 31.1% | (many diffs) |
| 42 | human | 440348 | NPIPB15 | nuclear pore complex intera... | XM_024450290.1 | 30.4% | 26.5% | (many diffs) |
| 43 | human | 728734 | NPIPB8 | nuclear pore complex intera... | XM_024450417.1 | 29.9% | 26.8% | (many diffs) |
| 44 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022826.2 | 29.8% | 26.7% | (many diffs) |
| 45 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022825.2 | 29% | 26% | (many diffs) |
| 46 | human | 728734 | NPIPB8 | nuclear pore complex intera... | XM_017023626.1 | 29% | 26% | (many diffs) |
| 47 | human | 728734 | NPIPB8 | nuclear pore complex intera... | XM_024450416.1 | 29% | 26% | (many diffs) |
| 48 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | NM_001287251.1 | 28% | 25.1% | (many diffs) |
| 49 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022824.2 | 28% | 25.1% | (many diffs) |
| 50 | human | 728734 | NPIPB8 | nuclear pore complex intera... | XM_017023625.1 | 28% | 25.1% | (many diffs) |
| 51 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | NM_001287250.1 | 27.8% | 24.9% | (many diffs) |
| 52 | human | 728734 | NPIPB8 | nuclear pore complex intera... | NM_001310136.1 | 27.8% | 24.9% | (many diffs) |
| 53 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_003118719.8 | 27.8% | 24.9% | (many diffs) |
| 54 | human | 728734 | NPIPB8 | nuclear pore complex intera... | XM_017023624.1 | 27.8% | 24.9% | (many diffs) |
| 55 | human | 728734 | NPIPB8 | nuclear pore complex intera... | XM_024450415.1 | 27.8% | 24.9% | (many diffs) |
| 56 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022823.2 | 26.7% | 23.9% | (many diffs) |
| 57 | human | 440348 | NPIPB15 | nuclear pore complex intera... | NM_001306094.1 | 26.4% | 23% | (many diffs) |
| 58 | human | 440348 | NPIPB15 | nuclear pore complex intera... | XM_011523498.3 | 26.4% | 23% | (many diffs) |
| 59 | human | 440348 | NPIPB15 | nuclear pore complex intera... | XM_017023248.1 | 26.4% | 23% | (many diffs) |
| 60 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_011545693.3 | 26.1% | 23.4% | (many diffs) |
| 61 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022820.2 | 26% | 23.3% | (many diffs) |
| 62 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022821.2 | 26% | 23.3% | (many diffs) |
| 63 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022822.2 | 26% | 23.3% | (many diffs) |
| 64 | human | 440348 | NPIPB15 | nuclear pore complex intera... | XM_011523496.2 | 25.5% | 22.2% | (many diffs) |
| 65 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022819.2 | 25.2% | 22.5% | (many diffs) |
| 66 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022818.2 | 25.2% | 22.5% | (many diffs) |
| 67 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022817.2 | 25.1% | 22.4% | (many diffs) |
| 68 | human | 728734 | NPIPB8 | nuclear pore complex intera... | XM_017023622.1 | 25.1% | 22.4% | (many diffs) |
| 69 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_011545690.3 | 24.9% | 22.2% | (many diffs) |
| 70 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022814.2 | 23.7% | 21.1% | (many diffs) |
| 71 | human | 100507607 | NPIPB9 | nuclear pore complex intera... | XM_017022815.2 | 23.7% | 21.1% | (many diffs) |
| 72 | human | 642799 | NPIPA2 | nuclear pore complex intera... | XM_024450387.1 | 21.2% | 21.3% | (many diffs) |
| 73 | human | 440353 | NPIPB12 | nuclear pore complex intera... | NM_001355401.1 | 15.6% | 14.7% | (many diffs) |
| 74 | human | 440345 | NPIPB4 | nuclear pore complex intera... | XM_024450289.1 | 15.5% | 14.5% | (many diffs) |
| 75 | human | 440345 | NPIPB4 | nuclear pore complex intera... | XM_024450287.1 | 13.8% | 12% | (many diffs) |
| 76 | human | 440345 | NPIPB4 | nuclear pore complex intera... | XM_024450288.1 | 13.8% | 12% | (many diffs) |
| 77 | human | 440345 | NPIPB4 | nuclear pore complex intera... | XM_024450286.1 | 13.7% | 11.9% | (many diffs) |
| 78 | human | 100132247 | NPIPB5 | nuclear pore complex intera... | NM_001135865.1 | 12.7% | 11.1% | (many diffs) |
| 79 | human | 613037 | NPIPB13 | nuclear pore complex intera... | NM_001321892.1 | 12.7% | 11.2% | (many diffs) |
| 80 | human | 23117 | NPIPB3 | nuclear pore complex intera... | NM_130464.3 | 12.7% | 11.1% | (many diffs) |
| 81 | human | 440345 | NPIPB4 | nuclear pore complex intera... | XM_017023247.1 | 12.6% | 11% | (many diffs) |
| 82 | human | 440345 | NPIPB4 | nuclear pore complex intera... | XM_024450285.1 | 12.6% | 10.9% | (many diffs) |
| 83 | human | 728888 | NPIPB11 | nuclear pore complex intera... | NM_001310137.2 | 12.6% | 10.7% | (many diffs) |
| 84 | human | 728888 | NPIPB11 | nuclear pore complex intera... | XM_024450420.1 | 12.2% | 10.5% | (many diffs) |
| 85 | human | 440345 | NPIPB4 | nuclear pore complex intera... | XM_024450284.1 | 11.8% | 10.2% | (many diffs) |
| 86 | human | 440345 | NPIPB4 | nuclear pore complex intera... | NM_001310148.1 | 11.8% | 10.2% | (many diffs) |
| 87 | human | 440345 | NPIPB4 | nuclear pore complex intera... | XM_017023244.2 | 11.8% | 10.2% | (many diffs) |
| 88 | human | 440345 | NPIPB4 | nuclear pore complex intera... | XM_024450283.1 | 11.5% | 10% | (many diffs) |
| 89 | human | 339044 | PKD1P1 | polycystin 1, transient rec... | NR_036447.1 | 7.1% | (many diffs) | |
| 90 | human | 102724993 | LOC102724993 | nuclear pore complex-intera... | XR_001756354.2 | 6.5% | (many diffs) | |
| 91 | human | 110006323 | PKD1P4-NPIPA8 | PKD1P4-NPIPA8 readthrough | NR_146336.1 | 6.3% | (many diffs) | |
| 92 | human | 105369154 | PKD1P6-NPIPP1 | PKD1P6-NPIPP1 readthrough | NR_123721.1 | 5.9% | (many diffs) | |
| 93 | human | 109951030 | PKD1P3-NPIPA1 | PKD1P3-NPIPA1 readthrough | NR_146231.1 | 5.3% | (many diffs) | |
| 94 | human | 110006322 | PKD1P5-LOC105376752 | PKD1P5-LOC105376752 readthr... | NR_146331.1 | 3.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 525
- ORF length:
- 459
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCAGTGGAG CATCGTCATT CTTCAGGATT GCCCTACTGG CCCTACCTCA 121 CAGCTGAAAC TTTAAAAAAC AGGATGGGCC ACCAGCCACC TCCTCCAACT CAACAACATT 181 CTATAATTGA TAACTCCCTG AGCCTCAAGA CACCTTCCGA GTGTGTGCTC TATCCCCTTC 241 CACCCTCAGC GGATGATAAT CTCAAGAAAC TACCcgagtg tctgctcact ccccttccac 301 cctcagctct accctcagcg gatgataatc tcaagacacc tgccgagtgc ctgctctatc 361 cccttccacc ctcagcggat gataatctca agacacctcc cgagtgtctg ctcactcccc 421 ttccaccctc agctccaccc tcagcggatg ataatctcaa gacacctcct gagtgtGTGT 481 GCTCTATCCC CTTCCACCCT CAGCGGATGA TAATCTCAAG AAACTACCCA ACTTTCTTGT 541 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c