Construct: ORF ccsbBroadEn_15307

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018869.1_s300c1, BRDN0000458165
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
NEK5 (341676)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 341676 NEK5 NIMA related kinase 5 NM_199289.3 95.6% 36% (many diffs)
2 human 341676 NEK5 NIMA related kinase 5 XM_017020555.1 89.7% 33.7% (many diffs)
3 human 341676 NEK5 NIMA related kinase 5 XM_017020557.1 86.8% 32.6% (many diffs)
4 human 341676 NEK5 NIMA related kinase 5 XM_017020556.1 83.3% 34.5% (many diffs)
5 human 341676 NEK5 NIMA related kinase 5 XM_011535066.2 81.6% 36.5% (many diffs)
6 human 341676 NEK5 NIMA related kinase 5 NM_001365552.1 80.6% 30.6% (many diffs)
7 human 341676 NEK5 NIMA related kinase 5 XR_941575.2 74.4% (many diffs)
8 human 341676 NEK5 NIMA related kinase 5 XM_006719808.4 67.9% 42.6% (many diffs)
9 human 341676 NEK5 NIMA related kinase 5 XR_941574.2 64.4% (many diffs)
10 human 341676 NEK5 NIMA related kinase 5 XM_011535068.2 53.8% 52.7% (many diffs)
11 human 341676 NEK5 NIMA related kinase 5 XR_001749542.1 48.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
98
ORF end:
890
ORF length:
792
Sequence:
1AATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT
61TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG GATAAGTACG ATGTGATTAA
121GGCCATCGGG CAAGGTGCCT TCGGGAAAGC ATACTTAGCT AAAGGGAAAT CAGATAGCAA
181GCACTGTGTC ATAAAAGAGA TCAATTTTGA AAAGATGCCC ATACAAGAAA AAGAAGCTTC
241AAAGAAAGAA GTGATTCTTC TGGAAAAGAT GAAACATCCC AACATTGTAG CCTTCTTCAA
301TTCATTTCAA GAGAATGGCA GGCTGTTTAT TGTAATGGAA TATTGTGATG GAGGGGATCT
361CATGAAAAGG ATCAATAGAC AACGGGGTGT GTTATTTAGT GAAGATCAGA TCCTCGGTTG
421GTTTGTACAG ATTTCTCTAG GACTAAAACA TATTCATGAC AGGAAGATAT TACACAGGGA
481CATAAAAGCT CAGAACATTT TTCTTAGCAA GAACGGAATG GTGGCAAAGC TTGGGGACTT
541TGGTATAGCA AGAGTCCTGA ATAATTCCAT GGAACTTGCT CGAACTTGTA TTGGAACACC
601TTACTACCTG TCCCCAGAGA TCTGTCAGAA TAAACCCTAC AACAATAAAA CGGATATTTG
661GTCTCTTGGC TGTGTCTTAT ATGAGCTCTG CACACTTAAA CATCCTTTTG AGGGTAACAA
721CTTACAGCAG CTGGTTCTGA AGATTTGTCA AGCACATTTT GCCCCAATAT CTCCGGGGTT
781TTCTCGTGAG CTCCATTCCT TGATATCTCA GCTCTTTCAA GTATCTCTCG AGACCGACAT
841CATAAATTCC ATTTTGAAAG CCCTTTTAGA GAATCTTATT CCCAATATTT GACTCCTGGA
901GGTCATTCAG GAGGaattca gtcacatgct tatatgcaga gcaggagcgc cagcttctcg
961acatgctggg aaggtggtcc agaagtgtaa aatacaaaaa gtgagattcc agggaaagtg
1021cccaccaaga tcaaggatat ctgtgccaat taaaaggaat gctatattgc atagaaatga
1081atggagacca ccagctggag cccagaaggc cagatctata aaaatgatag aaagacccaa
1141aattgctgct gtctgtggac attatgatta ttattatgct caacttgata tgctgaggag
1201gagagcccac aaaccaagtt atcaccctat tcctcaagaa aatactggag ttgaggatta
1261cggtcaggaa acgaggcatg gtccatcccc aagtcaatgg cctgctgagt accttcagag
1321aaaatttgaa gGTCCACAAT ATAAGTTTGA AAGTGGAGAA GCAATTGGGT CTTCGTCCAT
1381CTCTTGCCGA GCCAAATTAC AACCAAGAGA CAAGAGCTAG NAAGTAATGG AGAAGAGCCT
1441AGATTCCAGG AGCTGCCATT TAGGAAAAAC GAAATGAAGG AACAGGAATA TTGGAAGCAG
1501TTAGAGGAAA TACGCCAACA GTACCACAAT GACATGAAAG AAATTAGAAA GAAGATGGGG
1561AGAGAACCAG AGGAGAACTC AAAAATAAGT CATAAAACCT ATTTGGTGAA GAAGAGTAAC
1621CTGCCTGTCC ATCAAGATGC ATCTGAGGGA GAAGCACCTG TGCAGGACAT TGAAAAAGAC
1681TTGAAACAAA TGAGGCTTCA GAACACAAAG GAAAGTAAAA ATCCAGAACA GAAATATAAA
1741GCTAAGAAGG GGGTAAAATT TGAAATTAAT TTAGACAAAT GTATTTCTGA TGAAAACATC
1801CTCCAAGAGG AAGAGGCAAT GGATATACCA AATGAAACTT TGACCTTTGA GGATGGCATG
1861AAGTTTAAGG AATATGAATG TGTAAAGGAG CATGGAGATT ATACAGACAA AGCATTTGAA
1921AAACTTCACT GCCCAGAAGC AGGGTTTTCC ACGCAGACTG TAGCTGCTGT GGGAAACAGG
1981AGGCAGTGGG ATGGAGGAGC GCCTCAGACT CTGCTGCAGA TGATGGCAGT GGCCGACATC
2041ACCTCCACCT GCCCCACGGG GCCTGACAGT GAGTCTGTGC TTAGCGTCAG TCGTCAGGAA
2101GGGAAGACCA AGGACCCGTA CAGCCCAGTG CTCATCCTGA TGTTGCCAAC TTTCTTGTAC
2161AAAGTTGGCA TTATAAGAAA GCATTGCTTA TCAATTTGTT GCAACGAACA GGTCACTATC
2221AGTCAAAATA AAATCATTAT TGCCATCCCA GCCTGATAT

Download FASTA (ORF) (Full)

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