Construct: ORF ccsbBroadEn_15343
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012887.1_s300c1, BRDN0000457204
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NBPF8 (728841)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 728841 | NBPF8 | NBPF member 8 | NM_001037501.3 | 88% | 87.4% | (many diffs) |
| 2 | human | 400818 | NBPF9 | NBPF member 9 | NM_001037675.3 | 87.1% | 85.6% | (many diffs) |
| 3 | human | 102724250 | LOC102724250 | neuroblastoma breakpoint fa... | XM_024452498.1 | 86.3% | 84% | (many diffs) |
| 4 | human | 200030 | NBPF11 | NBPF member 11 | NM_001101663.4 | 86.2% | 77.7% | (many diffs) |
| 5 | human | 200030 | NBPF11 | NBPF member 11 | NM_183372.6 | 81.3% | 73.4% | (many diffs) |
| 6 | human | 400818 | NBPF9 | NBPF member 9 | NM_001277444.1 | 73.3% | 71.5% | (many diffs) |
| 7 | human | 200030 | NBPF11 | NBPF member 11 | XM_024453858.1 | 72.1% | 67.2% | (many diffs) |
| 8 | human | 284565 | NBPF15 | NBPF member 15 | NM_001170755.2 | 71.2% | 69.7% | (many diffs) |
| 9 | human | 284565 | NBPF15 | NBPF member 15 | NM_173638.4 | 71.2% | 69.7% | (many diffs) |
| 10 | human | 149013 | NBPF12 | NBPF member 12 | XM_024453443.1 | 68.2% | 65.8% | (many diffs) |
| 11 | human | 55672 | NBPF1 | NBPF member 1 | NM_017940.6 | 67.1% | 65.3% | (many diffs) |
| 12 | human | 101060684 | NBPF26 | NBPF member 26 | NM_001351372.1 | 61.1% | 59.6% | (many diffs) |
| 13 | human | 84224 | NBPF3 | NBPF member 3 | NM_032264.5 | 60.5% | 51.4% | (many diffs) |
| 14 | human | 200030 | NBPF11 | NBPF member 11 | XR_002959662.1 | 59.9% | (many diffs) | |
| 15 | human | 200030 | NBPF11 | NBPF member 11 | XR_002959669.1 | 59.7% | (many diffs) | |
| 16 | human | 200030 | NBPF11 | NBPF member 11 | XR_002959670.1 | 57.4% | (many diffs) | |
| 17 | human | 84224 | NBPF3 | NBPF member 3 | XM_006710957.1 | 56.8% | 48.5% | (many diffs) |
| 18 | human | 84224 | NBPF3 | NBPF member 3 | NM_001330381.2 | 55.8% | 49.9% | (many diffs) |
| 19 | human | 84224 | NBPF3 | NBPF member 3 | XM_006710958.1 | 55.8% | 49.9% | (many diffs) |
| 20 | human | 84224 | NBPF3 | NBPF member 3 | XM_006710959.2 | 55.8% | 49.9% | (many diffs) |
| 21 | human | 84224 | NBPF3 | NBPF member 3 | XM_011542276.1 | 55.8% | 49.9% | (many diffs) |
| 22 | human | 84224 | NBPF3 | NBPF member 3 | XM_011542277.1 | 55.8% | 49.9% | (many diffs) |
| 23 | human | 84224 | NBPF3 | NBPF member 3 | XM_011542278.1 | 55.8% | 49.9% | (many diffs) |
| 24 | human | 84224 | NBPF3 | NBPF member 3 | XM_011542281.1 | 55.8% | 49.9% | (many diffs) |
| 25 | human | 84224 | NBPF3 | NBPF member 3 | XM_017002499.2 | 55.8% | 49.9% | (many diffs) |
| 26 | human | 84224 | NBPF3 | NBPF member 3 | XM_024450188.1 | 55.8% | 49.9% | (many diffs) |
| 27 | human | 84224 | NBPF3 | NBPF member 3 | XM_024450190.1 | 55.8% | 49.9% | (many diffs) |
| 28 | human | 149013 | NBPF12 | NBPF member 12 | NM_001278141.1 | 55.5% | 53.6% | (many diffs) |
| 29 | human | 84224 | NBPF3 | NBPF member 3 | NM_001256416.3 | 55.3% | 47.2% | (many diffs) |
| 30 | human | 200030 | NBPF11 | NBPF member 11 | XM_024453859.1 | 53.9% | 51% | (many diffs) |
| 31 | human | 101929780 | NBPF25P | NBPF member 25, pseudogene | NR_104217.1 | 53.8% | (many diffs) | |
| 32 | human | 84224 | NBPF3 | NBPF member 3 | NM_001256417.3 | 53.1% | 45.4% | (many diffs) |
| 33 | human | 84224 | NBPF3 | NBPF member 3 | XM_017002500.1 | 52.1% | 46.9% | (many diffs) |
| 34 | human | 84224 | NBPF3 | NBPF member 3 | XM_017002501.1 | 52.1% | 46.9% | (many diffs) |
| 35 | human | 84224 | NBPF3 | NBPF member 3 | XM_017002502.1 | 52.1% | 46.9% | (many diffs) |
| 36 | human | 102724250 | LOC102724250 | neuroblastoma breakpoint fa... | XM_017030107.2 | 51.2% | 48.7% | (many diffs) |
| 37 | human | 200030 | NBPF11 | NBPF member 11 | NR_110864.2 | 43.7% | (many diffs) | |
| 38 | human | 200030 | NBPF11 | NBPF member 11 | NR_046188.4 | 41.4% | (many diffs) | |
| 39 | human | 343505 | NBPF7 | NBPF member 7 | XM_017001186.1 | 32.6% | 26.7% | (many diffs) |
| 40 | human | 728841 | NBPF8 | NBPF member 8 | NR_102405.2 | 32% | (many diffs) | |
| 41 | human | 728841 | NBPF8 | NBPF member 8 | NR_102404.2 | 30.9% | (many diffs) | |
| 42 | human | 25832 | NBPF14 | NBPF member 14 | NM_015383.2 | 28.9% | 28.2% | (many diffs) |
| 43 | human | 100132406 | NBPF10 | NBPF member 10 | NM_001039703.6 | 22.5% | 21.9% | (many diffs) |
| 44 | human | 100132406 | NBPF10 | NBPF member 10 | NM_001302371.3 | 21.5% | 20.9% | (many diffs) |
| 45 | human | 101060226 | NBPF19 | NBPF member 19 | NM_001351365.1 | 15.2% | 14.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2574
- ORF length:
- 2505
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTGAGGAAT GAGCGACAGT TCAAGGAGGA GAAGCTTGCA GAGCAGCTCA 121 AGCAAGCTGA GGAGCTCAGG CAATATAAAG TCCTGGTTCA CACTCAGGAA CGAGAGCTGA 181 CCCAGTTAAG GGAGAAGTTG CGGGAAGGGA GAGATGCCTC CCGCTCATTG AATGAGCATC 241 TCCAGGCCCT CCTCACTCTG GATGAGCCGG ACAAGTCCCA GGGGCAGGAC CTCCAAGAAC 301 AGCTGGCTGA GGGGTGTAGA CTGGCACAGC ACCTTGTCCA AAAGCTCAGC CCAGAAAATG 361 ACAAGCATga ggatgaagat gttcaagttg aggaggatga gaaagtgcag aaatcatctg 421 cccccaggga ggtgcagaag gctgaagtga gcaaagtccc tgaggactca ctggaggaat 481 gtgccatcac ttgttcaaat agccacggcc cttgtgactc caaccagcct cacaagaaca 541 tcaaaatcac atttgaggaa gacgaagtca actcaactct ggttgtagac agagaatcct 601 ctcatgatga atgtcaggat gctctaaaca ttctcccagt ccctggcccc acctcttctg 661 ccacaaacgt cagcatggtg gtatcagccg gccctttgtc cagcgagaag gcagagatga 721 acattctaga aatcaatgag aaattgcacc cccagctggc agagaagaaa cagcagttca 781 gaaacctcaa agagaaatgt tttctaactc aactggccgg cttcctggcc aaccagcaga 841 acaaatacaa atatgaagag tgcaaagatc tcataaaatc CATGCTGAGG AATGAGCGAC 901 AGTTCAAGGA GGAGAAGCTT GCAGAGCAGC TCAAGCAAGC TGAGGAGCTC AGGCAATATA 961 AAGTCCTGGT TCACACTCAG GAACGAGAGC TGACCCAGTT AAGGGAGAAG TTGCGGGAAG 1021 GGAGAGATGC CTCCCGCTCA TTGAATGAGC ATCTCCAGGC CCTCCTCACT CTGGATGAGC 1081 CGGACAAGTC CCAGGGGCAG GACCTCCAAG AACAGCTGGC TGAGGGGTGT AGACTGGCAC 1141 AGCACCTTGT CCAAAAGCTC AGCCCAGAAA ATGACAACGA TGACGATGAA GATGTTCAAG 1201 TTGAGGTGGC TGAGAAAGTG CAGAAATCGT CTGCCCCCAG GGAGATGCAG AAGGCTGAAG 1261 AAAAGGAAGT CCCTGAGGAC TCACTGGAGG AATGTGCCAT CACTTATTCA AATAGCCATG 1321 GCCCTTATGA CTCCAACCAG CCACATAGGA AAACCAAAAT CACATTTGAG GAAGACAAAG 1381 TCGACTCAGC TCTCATTGGC TCATCCTCTC ATGTTGAATG GGAGGATGCT GTACACATTA 1441 TTCCAGAAAA TGAAAGTGAT GATGAGGAAG AGGAAGAAAA AGGGCCAGTG TCTCCCAGGA 1501 ATCTGCAGGA GTCTGAAGAG GAGGAAGTCC CCCAGGAGTC CTGGGATGAA GGTTATTCGA 1561 CTCTCTCAAT TCCTCCTGAA ATGTTGGCCT CGTACAAGTC TTACAGCAGC ACATTTCACT 1621 CATTAGAGGA ACAGCAAGTC TGCATGGCTG TTGACATAGG CAGACATCGG TGGAATCAAG 1681 TGAAAAAGGA GGACCAAGAG GCAACAGGTC CCAGGCTCAG CAGGGAGCTG CTGGATGAGA 1741 AAGGGCCTGA AGTCTTGCAG GACTCACTGG ATAGATGTTA TTCAACTCCT TCAGGTTGCC 1801 TTGAACTGAC TGACTCATGC CAGCCCTACA GAAGTGCCTT TTACATATTG GAGCAACAGC 1861 GTGTTGGCTT GGCTGTTGAC ATGGATGAAA TTGAAAAGTA CCAAGAAGTG GAAGAAGACC 1921 AAGACCCATC ATGCCCCAGG CTCAGCAGGG AGCTGCTGGA TGAGAAAGAG CCTGAAGTCT 1981 TGCAGGACTC ACTGGATAGA TGTTATTCGA CTCCTTCAGG TTATCTTGAA CTGCCTGACT 2041 TAGGCCAGCC CTACAGCAGT GCTGTTTACT CATTGGAGGA ACAGTACCTT GGCTTGGCTC 2101 TTGACGTGGA CAGAATTAAA AAGGACCAAG AAGAGGAAGA AGACCAAGGC CCACCATGCC 2161 CCAGGCTCAG CAGGGAGCTG CTGGAGGTAG TAGAGCCTGA AGTCTTGCAG GACTCACTGG 2221 ATAGATGTTA TTCAACTCCT TCCAGTTGTC TTGAACAGCC TGACTCCTGC CAGCCGTATG 2281 GAAGTTCCTT TTATGCATTG GAGGAAAAAC ATGTTGGCTT TTCTCTTGAC GTGGGAGAAA 2341 TTGAAAAGAA GGGGAAGGGG AAGATAAGAA GGGGAAGAAG ATCAAAGAAG AAAAGAAGAA 2401 GGGGAAGAAA AGAAGGGGAA GAAGATCAAA ACCCACCATG CCCCAGGCTC AACAGCGTGC 2461 TGATGGAAGT GGAAGAGCCT GAAGTCTTAC AGGACTCACT GGATAGATGT TATTCGACTC 2521 CATCAATGTA CTGTGAACTA CGTGACTCAT TCCAGCACTA CAGAAGTGTG TTTTTGCCAA 2581 CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt tgcaacgaac