Construct: ORF ccsbBroadEn_15379
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004250.1_s300c1, BRDN0000398607
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ENTPD5 (957)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | NM_001249.4 | 100% | 100% | |
| 2 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | NM_001321985.2 | 100% | 100% | |
| 3 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | NM_001321986.2 | 100% | 100% | |
| 4 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | NM_001321987.2 | 100% | 100% | |
| 5 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | NM_001321988.2 | 100% | 100% | |
| 6 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | XM_005268224.3 | 100% | 100% | |
| 7 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | XM_017021813.1 | 100% | 100% | |
| 8 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | XM_024449758.1 | 100% | 100% | |
| 9 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | NM_001330189.2 | 94.4% | 93.7% | (many diffs) |
| 10 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | XM_006720325.3 | 94.4% | 93.7% | (many diffs) |
| 11 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | XM_017021814.1 | 94.4% | 93.7% | (many diffs) |
| 12 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | NM_001321984.2 | 94% | 93% | (many diffs) |
| 13 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | XM_006720326.2 | 89% | 89% | 885_886ins141 |
| 14 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | XM_017021816.1 | 89% | 89% | 885_886ins141 |
| 15 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | XM_017021817.1 | 83.4% | 82.7% | (many diffs) |
| 16 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | XR_001750611.2 | 73.4% | 1_188del;828_829ins80;1393_1559del | |
| 17 | human | 957 | ENTPD5 | ectonucleoside triphosphate... | XR_001750612.1 | 70.5% | (many diffs) | |
| 18 | mouse | 12499 | Entpd5 | ectonucleoside triphosphate... | NM_001026214.2 | 87.2% | 88% | (many diffs) |
| 19 | mouse | 12499 | Entpd5 | ectonucleoside triphosphate... | NM_001286049.1 | 87.2% | 88% | (many diffs) |
| 20 | mouse | 12499 | Entpd5 | ectonucleoside triphosphate... | NM_001286058.1 | 87.2% | 88% | (many diffs) |
| 21 | mouse | 12499 | Entpd5 | ectonucleoside triphosphate... | NM_007647.3 | 82.4% | 83.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1353
- ORF length:
- 1284
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat ggccacttct tggggcacag tctttttcat gctggtggta tcctgtgttt 121 gcagcgctgt ctcccacagg aaccagcaga cttggtttga gggtatcttc ctgtcttcca 181 tgtgccccat caatgtcagc gccagcacct tgtatggaat tatgtttgat gcagggagca 241 ctggaactcg aattcatgtt tacacctttg tgcagaaaat gccaggacag cttccaattc 301 tagaagggga agtttttgat tctgtgaagc caggactttc tgcttttgta gatcaaccta 361 agcagggtgc tgagaccgtt caagggctct tagaggtggc caaagactca atcccccgaa 421 gtcactggaa aaagacccca gtggtcctaa aggcaacagc aggactacgc ttactgccag 481 aacacaaagc caaggctctg ctctttgagg taaaggagat cttcaggaag tcacctttcc 541 tggtaccaaa gggcagtgtt agcatcatgg atggatccga cgaaggcata ttagcttggg 601 ttactgtgaa ttttctgaca ggtcagctgc atggccacag acaggagact gtggggacct 661 tggacctagg gggagcctcc acccaaatca cgttcctgcc ccagtttgag aaaactctgg 721 aacaaactcc taggggctac ctcacttcct ttgagatgtt taacagcact tataagctct 781 atacacatag ttacctggga tttggattga aagctgcaag actagcaacc ctgggagccc 841 tggagacaga agggactgat gggcacactt tccggagtgc ctgtttaccg agatggttgg 901 aagcagagtg gatctttggg ggtgtgaaat accagtatgg tggcaaccaa gaaggggagg 961 tgggctttga gccctgctat gccgaagtgc tgagggtggt acgaggaaaa cttcaccagc 1021 cagaggaggt ccagagaggt tccttctatg ctttctctta ctattatgac cgagctgttg 1081 acacagacat gattgattat gaaaaggggg gtattttaaa agttgaagat tttgaaagaa 1141 aagccaggga agtgtgtgat aacttggaaa acttcacctc aggcagtcct ttcctgtgca 1201 tggatctcag ctacatcaca gccctgttaa aggatggctt tggctttgca gacagcacag 1261 tcttacagct cacaaagaaa gtgaacaaca tagagacggg ctgggccttg ggggccacct 1321 ttcacctgtt gcagtctctg ggcatctccc attnnccaac tttcttgtac aaagttggca 1381 ttataagaaa gcattgctta tcaatttgtt gcaacgaac