Transcript: Human XM_017021814.1

PREDICTED: Homo sapiens ectonucleoside triphosphate diphosphohydrolase 5 (inactive) (ENTPD5), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ENTPD5 (957)
Length:
1522
CDS:
189..1412

Additional Resources:

NCBI RefSeq record:
XM_017021814.1
NBCI Gene record:
ENTPD5 (957)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017021814.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000229314 GATCCGACGAAGGCATATTAG pLKO_005 694 CDS 100% 13.200 18.480 N ENTPD5 n/a
2 TRCN0000229313 AGCACCTTGTATGGAATTATG pLKO_005 324 CDS 100% 13.200 9.240 N ENTPD5 n/a
3 TRCN0000229315 TCACTTCCTTTGAGATGTTTA pLKO_005 862 CDS 100% 13.200 9.240 N ENTPD5 n/a
4 TRCN0000050479 GCAGACTTGGTTTGAGGGTAT pLKO.1 266 CDS 100% 4.050 2.835 N ENTPD5 n/a
5 TRCN0000050478 GCCCTGTTAAAGGATGGCTTT pLKO.1 1341 CDS 100% 4.050 2.835 N ENTPD5 n/a
6 TRCN0000050482 GAAGGCATATTAGCTTGGGTT pLKO.1 702 CDS 100% 2.640 1.848 N ENTPD5 n/a
7 TRCN0000050481 GCCAGCACCTTGTATGGAATT pLKO.1 321 CDS 100% 0.000 0.000 N ENTPD5 n/a
8 TRCN0000229316 ATGCTTTCTCTTACTATTATG pLKO_005 1168 CDS 100% 13.200 7.920 N ENTPD5 n/a
9 TRCN0000050480 GCTCTATACACATAGTTACTT pLKO.1 896 CDS 100% 5.625 3.938 N ENTPD5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017021814.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13825 pDONR223 100% 99.8% 99.5% None 8C>G;10T>G n/a
2 ccsbBroad304_13825 pLX_304 0% 99.8% 99.5% V5 8C>G;10T>G n/a
3 TRCN0000472576 CTGATAGGACTATTAAGCTCCGCA pLX_317 31.2% 99.8% 99.5% V5 8C>G;10T>G n/a
4 ccsbBroadEn_15379 pDONR223 0% 94.4% 93.7% None (many diffs) n/a
5 ccsbBroad304_15379 pLX_304 0% 94.4% 93.7% V5 (many diffs) n/a
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