Construct: ORF ccsbBroadEn_15495

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005800.1_s300c1, BRDN0000392074
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAX (4149)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4149 MAX MYC associated factor X NM_145112.3 100% 100%
2 human 4149 MAX MYC associated factor X NM_002382.5 94.3% 94.3% 37_63del
3 human 4149 MAX MYC associated factor X XM_011536773.3 69.5% 55.8% (many diffs)
4 human 4149 MAX MYC associated factor X NM_145113.3 57.9% 55.6% (many diffs)
5 human 4149 MAX MYC associated factor X NM_001320415.2 55% 40.5% (many diffs)
6 human 4149 MAX MYC associated factor X XM_017021312.2 55% 40.5% (many diffs)
7 human 4149 MAX MYC associated factor X XM_017021313.1 55% 40.5% (many diffs)
8 human 4149 MAX MYC associated factor X NM_001271069.1 44.5% 32.4% (many diffs)
9 human 4149 MAX MYC associated factor X NM_001271068.1 42.9% 34.3% (many diffs)
10 human 4149 MAX MYC associated factor X NM_197957.3 42% 30.6% (many diffs)
11 human 4149 MAX MYC associated factor X NM_145114.2 40.7% 32.5% (many diffs)
12 human 4149 MAX MYC associated factor X NR_073137.1 22.2% (many diffs)
13 human 4149 MAX MYC associated factor X XR_001750327.2 21.6% 1_190del;458_558del;745_2097del
14 human 4149 MAX MYC associated factor X XR_943452.3 20.9% 1_190del;459_624del;810_2162del
15 human 4149 MAX MYC associated factor X XR_001750326.2 20.7% 1_190del;458_639del;826_2178del
16 human 4149 MAX MYC associated factor X XR_943450.3 20.5% (many diffs)
17 human 4149 MAX MYC associated factor X XR_943451.3 20.4% (many diffs)
18 human 4149 MAX MYC associated factor X XR_002957553.1 17.3% (many diffs)
19 mouse 17187 Max Max protein NM_001146176.1 95.8% 99.3% (many diffs)
20 mouse 17187 Max Max protein NM_008558.2 90.4% 93.7% (many diffs)
21 mouse 17187 Max Max protein XM_006515523.3 76.6% 76.1% (many diffs)
22 mouse 17187 Max Max protein XM_006515524.3 56% 55.6% (many diffs)
23 mouse 17187 Max Max protein XM_017314968.1 39.4% 41.1% (many diffs)
24 mouse 17187 Max Max protein XR_001780418.1 20.4% (many diffs)
25 mouse 17187 Max Max protein XR_381483.3 19.8% (many diffs)
26 mouse 17187 Max Max protein XR_872708.2 19.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
519
ORF length:
453
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgag cgataacgat gacatcgagg tggagagcga cgctgacaaa cgggctcatc
121ataatgcact ggaacgaaaa cgtagggacc acatcaaaga cagctttcac agtttgcggg
181actcagtccc atcactccaa ggagagaagg catcccgggc ccaaatccta gacaaagcca
241cagaatatat ccagtatatg cgaaggaaaa accacacaca ccagcaagat attgacgacc
301tcaagcggca gaatgctctt ctggagcagc aagtccgtgc actggagaag gcgaggtcaa
361gtgcccaact gcagaccaac tacccctcct cagacaacag cctctacacc aacgccaagg
421gcagcaccat ctctgccttc gatgggggct cggactccag ctcggagtct gagcctgaag
481agccccaaag caggaagaag ctccggatgg aggccagctn nccaactttc ttgtacaaag
541ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)