Construct: ORF ccsbBroadEn_15682
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000269.1_s300c1, BRDN0000388575
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RABGAP1L (9910)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | NM_001035230.2 | 100% | 100% | |
| 2 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | NM_001243763.1 | 100% | 100% | |
| 3 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | XM_024451295.1 | 100% | 100% | |
| 4 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | NM_001366454.1 | 27.8% | 28% | 205_205delAinsTTTGTATATTT;207_726del |
| 5 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | NM_001330989.2 | 21.9% | 22% | 205_205delAinsTTTGTATATTT;207_924del |
| 6 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | XM_017002996.1 | 21.9% | 22% | 205_205delAinsTTTGTATATTT;207_924del |
| 7 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | XM_017002997.1 | 21.9% | 22% | 205_205delAinsTTTGTATATTT;207_924del |
| 8 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | XR_922004.1 | 6.8% | 1_2650del;2867_3154del | |
| 9 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | NR_158982.1 | 2.3% | 1_2614del;2819_2819delAinsTTTGTATATTT;2821_8848del | |
| 10 | mouse | 29809 | Rabgap1l | RAB GTPase activating prote... | XM_006496883.3 | 93.9% | 95.8% | (many diffs) |
| 11 | mouse | 29809 | Rabgap1l | RAB GTPase activating prote... | XM_006496881.3 | 20.6% | 21.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 282
- ORF length:
- 216
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgat ggaagaaatc tccattatgg tagcctatga cgcccatgtt ttcagccagc 121 tgcacgatga agacttcctc actagtctgg tggccatcag caagcccagg tctatggtac 181 caaccaagaa gctgaagaaa tatgagaaag aatatcagac aatgcgagag agtcagctgc 241 aacaggaaga cccaatggat agatacaagt ttgtatattt gtnnccaact ttcttgtaca 301 aagttggcat tataagaaag cattgcttat caatttgttg caacgaac