Construct: ORF ccsbBroadEn_15989
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004246.1_s300c1, BRDN0000396594
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLIP4 (79745)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_011533110.1 | 81.8% | 82% | 195A>G;1211_1212insAGTTCT;1476_1794delinsG |
| 2 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | NM_001287528.1 | 81.8% | 81.8% | 1_321del;516A>G;1532_1533insAGTTCT |
| 3 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_017004959.2 | 80.5% | 80.6% | (many diffs) |
| 4 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_006712105.4 | 78.4% | 78% | (many diffs) |
| 5 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | NM_001287527.2 | 69.4% | 69.5% | (many diffs) |
| 6 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | NM_024692.6 | 69.4% | 69.5% | (many diffs) |
| 7 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_005264562.2 | 69.4% | 69.5% | (many diffs) |
| 8 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_005264563.1 | 69.4% | 69.5% | (many diffs) |
| 9 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_006712104.2 | 69.4% | 69.5% | (many diffs) |
| 10 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_011533109.1 | 69.4% | 69.5% | (many diffs) |
| 11 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_017004958.1 | 69.4% | 69.5% | (many diffs) |
| 12 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | NR_109844.1 | 63% | (many diffs) | |
| 13 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XR_939718.3 | 34.5% | (many diffs) | |
| 14 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XR_939717.3 | 30% | (many diffs) | |
| 15 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XR_001738944.2 | 29.6% | (many diffs) | |
| 16 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XR_002959339.1 | 27.4% | (many diffs) | |
| 17 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XR_939719.3 | 22.4% | (many diffs) | |
| 18 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | NM_001271484.1 | 66.7% | 70.5% | (many diffs) |
| 19 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | NM_175378.1 | 61.2% | 64.8% | (many diffs) |
| 20 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525154.2 | 61.2% | 64.8% | (many diffs) |
| 21 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | NM_001271483.1 | 57.6% | 60.8% | (many diffs) |
| 22 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525147.3 | 57.6% | 60.8% | (many diffs) |
| 23 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | NM_030179.3 | 56.8% | 59.9% | (many diffs) |
| 24 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525143.3 | 56.8% | 59.9% | (many diffs) |
| 25 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525144.2 | 56.8% | 59.9% | (many diffs) |
| 26 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525145.3 | 56.8% | 59.9% | (many diffs) |
| 27 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525146.1 | 56.8% | 59.9% | (many diffs) |
| 28 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525148.3 | 52% | 55.1% | (many diffs) |
| 29 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525149.2 | 52% | 55.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1548
- ORF length:
- 1482
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgac tcttttacat tatacctgca aatctggagc tcatggtatt ggtgatgtgg 121 aaacagctgt aaaatttgca actcagctta ttgacctggg agcagacatt agtttgcgga 181 gtcgctggac aaacatgaat gctttgcatt atgctgctta ttttgatgtc cctgaactta 241 taagagtgat tttgaaaacg tcgaaaccaa aagatgtgga tgccacttgc agtgatttta 301 attttggaac agctttgcat attgcagcat acaacttgtg tgcaggtgct gtgaagtgcc 361 tcttggagca gggagcaaat cctgcattta ggaatgacaa aggacagatc cctgctgatg 421 ttgttccaga cccagtagat atgccgttag agatggctga cgccgcagcc actgctaagg 481 aaatcaagca gatgcttcta gatgcggtgc ctctgtcatg taacatctca aaggccatgc 541 tcccaaatta tgatcatgtc actggcaagg caatgcttac gtcacttggc ctgaagttgg 601 gggatcgtgt tgttattgca ggacagaagg ttggtacatt aagattttgt ggaacaactg 661 aatttgcaag tgggcagtgg gctggcattg aactggatga accagaagga aaaaataatg 721 gaagtgttgg aaaagtccag tactttaaat gtgcccccaa gtatggtatt tttgcacctc 781 tttcaaagat aagtaaagca aaaggtcgaa ggaagaatat aacacacact ccttctacaa 841 aagctgctgt acctctcatc aggtcccaga aaattgacgt agctcatgtg acgtcaaaag 901 taaatactgg attaatgaca tcaaaaaaag atagtgcttc tgagtcaaca ctttcattgc 961 ctcctggtga agaacttaaa actgtgacag agaaagatgt tgccctgctt ggatctgtca 1021 gcagctgctc ctctacatct tctttggaac acagacagag ctaccccaag aaacagaatg 1081 caatcagcag taacaagaag acaatgagca aaagcccttc cctttcatcc agagccagtg 1141 ctggtttgaa ttcctcagca acatctacag caaataatag ccgttgcgag ggggaactcc 1201 gcctcggaga gagagtgtta gtggtaggac agagactggg caccattagg ttctttggga 1261 caacaaactt cgctccagtt ctaggatatt ggtatggtat agagcttgaa aaaccccatg 1321 gcaagaatga tggttcagtt ggaggtgtgc agtattttag ctgttctcca agatatggaa 1381 tatttgctcc cccatccagg gtgcaaagag taacagattc cctggatacc ctttcagaaa 1441 tttcttcaaa taaacagaac cattcttatc ctggttttag gagaagtttt agcacaactt 1501 ctgcttcttc ccaaaaggag attaacagaa gaaatgcttt ttccaagtnn ccaactttct 1561 tgtacaaagt tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac