Construct: ORF ccsbBroadEn_16008

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004994.1_s300c1, BRDN0000389941
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FBXO38 (81545)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81545 FBXO38 F-box protein 38 XM_011537684.3 54% 54% 1_1086del
2 human 81545 FBXO38 F-box protein 38 XM_017009900.2 54% 54% 1_1086del
3 human 81545 FBXO38 F-box protein 38 XM_017009899.1 51.8% 51.8% 1_1188del
4 human 81545 FBXO38 F-box protein 38 XM_017009902.2 44.5% 44.5% 1_1086del;1227_1228ins225
5 human 81545 FBXO38 F-box protein 38 XM_017009901.2 42.7% 42.7% 1_1188del;1329_1330ins225
6 human 81545 FBXO38 F-box protein 38 NM_001271723.1 40.1% 34% (many diffs)
7 human 81545 FBXO38 F-box protein 38 NM_205836.3 35.8% 35.8% 1_2286del
8 human 81545 FBXO38 F-box protein 38 XM_024446223.1 35.8% 35.8% 1_2286del
9 human 81545 FBXO38 F-box protein 38 XM_006714797.2 32.3% 32.3% 1_2286del;2524_2525ins126
10 human 81545 FBXO38 F-box protein 38 NM_030793.5 29.5% 29.5% 1_2286del;2427_2428ins225
11 human 81545 FBXO38 F-box protein 38 XR_001742284.1 27.3% 1_2432del;3002_3003ins74;3637_4328del
12 mouse 107035 Fbxo38 F-box protein 38 XM_017317781.1 49.7% 52.9% (many diffs)
13 mouse 107035 Fbxo38 F-box protein 38 XM_017317780.1 49.6% 52.8% (many diffs)
14 mouse 107035 Fbxo38 F-box protein 38 NM_134136.3 32.4% 34.5% (many diffs)
15 mouse 107035 Fbxo38 F-box protein 38 XM_006525497.3 32.4% 34.5% (many diffs)
16 mouse 107035 Fbxo38 F-box protein 38 XM_006525498.1 32.4% 34.5% (many diffs)
17 mouse 107035 Fbxo38 F-box protein 38 XM_006525499.3 32.4% 34.5% (many diffs)
18 mouse 107035 Fbxo38 F-box protein 38 XM_006525502.3 26.3% 28.5% (many diffs)
19 mouse 107035 Fbxo38 F-box protein 38 XM_006525501.3 26.3% 28.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1344
ORF length:
1278
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgga ggagggagat gcagagagtt ctgtctgccc cagatgctgc tgtcacaggc
121cccaggaatc ccaaaggaga actagcaggt gttctgatga ggaacgtcct tcaaccagcc
181gagcctgtgt tgtgaatggc ccggatggta cgagatccgc cttttccttt aggactctgc
241cacaaggggg gtcttcaggc ccagcacatg atgagaggac taatgggagt ggctctgggg
301ctacaggtga ggacaggagg gggagctccc agcctgagag ttgtgacgtg cagtctaatg
361aagactaccc tcggaggccc ctaaccaggg ccaggagcag actgtcccat gtactgctgg
421tatctgagtc agaagtagcc aaaacaaagc cacgtcacgc catgaaacgg aagcggacag
481cagataaatc cactagtaca agtgatcctg tgatcgagga tgaccatgtg caggttcttg
541tattaaaatc caagaatctt gttggagtca ctatgaccaa ttgtggaatc acagatctag
601tgctaaaaga ctgtccaaag atgatgttca tccatgctac caggtgcagg gtactaaaac
661atttaaaggt agaaaatgca ccaattgtaa accgatttga ctatgcacag tgcaagaaac
721tgaacatgga tcaggtacta gaccagatac taagaatgcc acccgagaga aaccgcatca
781tatacctacg cccaatgcag caggtggaca ctctaacttt ggagcagaag ctatttagtg
841gtccctaccc ctatcacatc tgtattatcc atgaattcag taaccctccc aatgtccgga
901ataaggtgcg cattcgcagc tggatggaca ctatagcaaa catcaatcaa gagctcatta
961aatatgaatt cttccctgaa gccactcgaa gtgaagaaga cttaaagaaa taccccaagt
1021acccctgggg gagagaaatc tatactttag aaggtgttgt ggatggagct ccatattcca
1081tgatttctga cttcccttgg ctgaggtcat tacgagctgc agagcccaac agcttcgctc
1141gatacgactt tgaagacgat gaagaaagca ctatctatgc tcctagaagg aaaggacagc
1201tgtctgcaga catctgtatg gaaacaatag gagaggaaat ttcagagatg cgtcagatga
1261agaagggtgt atttcagcga gtagtggcaa tttttatcca ctattgtgat gtcaatggag
1321agccagttga agatgactac atttnnccaa ctttcttgta caaagttggc attataagaa
1381agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)