Construct: ORF ccsbBroadEn_16095
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005346.1_s300c1, BRDN0000397937
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C9orf85 (138241)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 138241 | C9orf85 | chromosome 9 open reading f... | NM_001365057.2 | 50.2% | 49.2% | 103_110delAAAATTAA;113_207delinsT |
| 2 | human | 138241 | C9orf85 | chromosome 9 open reading f... | NM_182505.5 | 22% | 21.6% | 103_110delAAAATTAA;113_471delinsT |
| 3 | human | 138241 | C9orf85 | chromosome 9 open reading f... | NM_001365053.2 | 19.3% | 18.9% | 103_110delAAAATTAA;113_537delinsT |
| 4 | human | 138241 | C9orf85 | chromosome 9 open reading f... | NR_157410.2 | 7.9% | 1_96del;198delG;203_1315del | |
| 5 | human | 138241 | C9orf85 | chromosome 9 open reading f... | NR_157408.2 | 2.7% | 1_96del;200C>G;202_3838del | |
| 6 | human | 138241 | C9orf85 | chromosome 9 open reading f... | NR_157409.2 | 2.6% | 1_96del;199_206delAAAATTAA;209_3925delinsT | |
| 7 | mouse | 66206 | 1110059E24Rik | RIKEN cDNA 1110059E24 gene | NM_025423.2 | 20.2% | 20.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 171
- ORF length:
- 105
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgag ctcccagaaa ggcaacgtgg ctcgttccag acctcagaag caccagaata 121 cgtttagctt caaaaatgac aagttcgata aaagtgtgca gaccaagtgt tnnccaactt 181 tcttgtacaa agttggcatt ataagaaagc attgcttatc aatttgttgc aacgaac