Transcript: Human NM_000382.3

Homo sapiens aldehyde dehydrogenase 3 family member A2 (ALDH3A2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
ALDH3A2 (224)
Length:
3703
CDS:
222..1679

Additional Resources:

NCBI RefSeq record:
NM_000382.3
NBCI Gene record:
ALDH3A2 (224)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_000382.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000027215 CCCGACTATATTCTCTGTGAA pLKO.1 951 CDS 100% 4.950 6.930 N ALDH3A2 n/a
2 TRCN0000027194 GCATAACCATAAGCTCATCAA pLKO.1 1316 CDS 100% 4.950 6.930 N ALDH3A2 n/a
3 TRCN0000027217 CGACCTGTGCAAGAGTGAATT pLKO.1 362 CDS 100% 0.000 0.000 N ALDH3A2 n/a
4 TRCN0000027191 GCAGGAAATGCTGTGATTATA pLKO.1 603 CDS 100% 15.000 10.500 N ALDH3A2 n/a
5 TRCN0000027188 CCTCTGGCTCTTTATGTATTT pLKO.1 1293 CDS 100% 13.200 9.240 N ALDH3A2 n/a
6 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 2499 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_000382.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00052 pDONR223 100% 94.5% 94.6% None 1444_1450delGCAGAATinsA;1452T>A;1455_1456ins75 n/a
2 ccsbBroad304_00052 pLX_304 0% 94.5% 94.6% V5 1444_1450delGCAGAATinsA;1452T>A;1455_1456ins75 n/a
3 TRCN0000470144 ACAACCCTTCAACAGTCACCCATA pLX_317 29.9% 94.5% 94.6% V5 1444_1450delGCAGAATinsA;1452T>A;1455_1456ins75 n/a
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