Transcript: Human NM_000737.3

Homo sapiens chorionic gonadotropin subunit beta 3 (CGB3), mRNA.

Source:
NCBI, updated 2019-09-23
Taxon:
Homo sapiens (human)
Gene:
CGB3 (1082)
Length:
933
CDS:
405..902

Additional Resources:

NCBI RefSeq record:
NM_000737.3
NBCI Gene record:
CGB3 (1082)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_000737.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000256848 GTGGCTCTCAGCTGTCAATGT pLKO_005 714 CDS 100% 4.950 2.475 Y CGB8 n/a
2 TRCN0000256994 TGGCTCTCAGCTGTCAATGTG pLKO_005 715 CDS 100% 4.950 2.475 Y CGB7 n/a
3 TRCN0000369665 ATCACCGTCAACACCACCATC pLKO_005 543 CDS 100% 4.050 2.025 Y CGB7 n/a
4 TRCN0000256847 TCACCGTCAACACCACCATCT pLKO_005 544 CDS 100% 4.050 2.025 Y CGB8 n/a
5 TRCN0000262693 ACCGTCAACACCACCATCTGT pLKO_005 546 CDS 100% 3.000 1.500 Y CGB5 n/a
6 TRCN0000082825 CATCACCGTCAACACCACCAT pLKO.1 542 CDS 100% 2.640 1.320 Y CGB3 n/a
7 TRCN0000262695 AGCTGTCAATGTGCACTCTGC pLKO_005 723 CDS 100% 2.160 1.080 Y CGB5 n/a
8 TRCN0000082823 CCGTGGCTCTCAGCTGTCAAT pLKO.1 712 CDS 100% 1.650 0.825 Y CGB3 n/a
9 TRCN0000082827 CCGTGTGCATCACCGTCAACA pLKO.1 535 CDS 100% 1.650 0.825 Y CGB3 n/a
10 TRCN0000377304 CTCAGGTGGTGTGCAACTACC pLKO_005 622 CDS 100% 1.350 0.675 Y CGB7 n/a
11 TRCN0000244627 GATGTGCGCTTCGAGTCCATC pLKO_005 645 CDS 100% 1.350 0.675 Y CGB7 n/a
12 TRCN0000256849 GGTGTGCAACTACCGCGATGT pLKO_005 629 CDS 100% 1.350 0.675 Y CGB8 n/a
13 TRCN0000281558 GTGTGCAACTACCGCGATGTG pLKO_005 630 CDS 100% 1.350 0.675 Y CGB5 n/a
14 TRCN0000082826 CGATGTGCGCTTCGAGTCCAT pLKO.1 644 CDS 100% 0.880 0.440 Y CGB3 n/a
15 TRCN0000242639 ATCAATGCCACCCTGGCTGTG pLKO_005 498 CDS 100% 0.750 0.375 Y CGB2 n/a
16 TRCN0000256850 ATGTGCGCTTCGAGTCCATCC pLKO_005 646 CDS 100% 0.750 0.375 Y CGB8 n/a
17 TRCN0000377340 TGTTGCTGCTGCTGAGCATGG pLKO_005 430 CDS 100% 0.750 0.375 Y CGB8 n/a
18 TRCN0000262694 CATCAATGCCACCCTGGCTGT pLKO_005 497 CDS 100% 0.720 0.360 Y CGB5 n/a
19 TRCN0000082824 GTGGTGTGCAACTACCGCGAT pLKO.1 627 CDS 100% 0.720 0.360 Y CGB3 n/a
20 TRCN0000242637 TGTCAATGTGCACTCTGCCGC pLKO_005 726 CDS 100% 0.180 0.090 Y CGB2 n/a
21 TRCN0000377297 ACCATGACCCGCGTGCTGCAG pLKO_005 582 CDS 100% 0.000 0.000 Y CGB7 n/a
22 TRCN0000242876 AGTCCATCCGGCTCCCTGGCT pLKO_005 658 CDS 100% 0.000 0.000 Y CGB1 n/a
23 TRCN0000083467 CACCACCATCTGTGCCGGCTA pLKO.1 554 CDS 100% 0.000 0.000 Y LHB n/a
24 TRCN0000242638 CACCATCTGTGCCGGCTACTG pLKO_005 557 CDS 100% 0.000 0.000 Y CGB2 n/a
25 TRCN0000242874 CACCATGACCCGCGTGCTGCA pLKO_005 581 CDS 100% 0.000 0.000 Y CGB1 n/a
26 TRCN0000369594 CCACCATCTGTGCCGGCTACT pLKO_005 556 CDS 100% 0.000 0.000 Y CGB7 n/a
27 TRCN0000242640 CTCCTACGCCGTGGCTCTCAG pLKO_005 704 CDS 100% 0.000 0.000 Y CGB2 n/a
28 TRCN0000242877 GCAACTACCGCGATGTGCGCT pLKO_005 634 CDS 100% 0.000 0.000 Y CGB1 n/a
29 TRCN0000083466 GCGCTTCGAGTCCATCCGGCT pLKO.1 650 CDS 100% 0.000 0.000 Y LHB n/a
30 TRCN0000242875 GGCATCCAAGGAGCCGCTTCG pLKO_005 461 CDS 100% 0.000 0.000 Y CGB1 n/a
31 TRCN0000242636 GGCGGGACATGGGCATCCAAG pLKO_005 450 CDS 100% 0.000 0.000 Y CGB2 n/a
32 TRCN0000242878 GGCTGTGGAGAAGGAGGGCTG pLKO_005 512 CDS 100% 0.000 0.000 Y CGB1 n/a
33 TRCN0000369593 TGCCACCCTGGCTGTGGAGAA pLKO_005 503 CDS 100% 0.000 0.000 Y CGB7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_000737.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04608 pDONR223 100% 99.7% 100% None 450C>T n/a
2 ccsbBroad304_04608 pLX_304 0% 99.7% 100% V5 450C>T n/a
3 TRCN0000469909 AAGTGTAGATATCACGCCGCTCGG pLX_317 77.4% 99.7% 100% V5 450C>T n/a
4 ccsbBroadEn_09361 pDONR223 100% 99.5% 99.3% None 10T>C;450C>T n/a
5 ccsbBroad304_09361 pLX_304 0% 99.5% 99.3% V5 10T>C;450C>T n/a
6 TRCN0000467261 GATAACGAAGTGCTTTGCGACCGT pLX_317 83.3% 99.5% 99.3% V5 10T>C;450C>T n/a
7 ccsbBroadEn_05987 pDONR223 100% 99.5% 100% None 438C>G;450C>T n/a
8 ccsbBroad304_05987 pLX_304 0% 99.5% 100% V5 438C>G;450C>T n/a
9 TRCN0000479508 AGGTGCAAGGTGGAACATCCGCTA pLX_317 39.4% 99.5% 100% V5 438C>G;450C>T n/a
10 ccsbBroadEn_13032 pDONR223 100% 64.4% 19% None (many diffs) n/a
11 ccsbBroad304_13032 pLX_304 0% 64.4% 19% V5 (many diffs) n/a
12 TRCN0000478100 ATGCTTCTTACTTAGTGCGTGGCG pLX_317 81.6% 64.4% 19% V5 (many diffs) n/a
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