Transcript: Human NM_001035511.2

Homo sapiens succinate dehydrogenase complex subunit C (SDHC), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
SDHC (6391)
Length:
13278
CDS:
26..478

Additional Resources:

NCBI RefSeq record:
NM_001035511.2
NBCI Gene record:
SDHC (6391)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001035511.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000338821 AGTACCTGGTAGACCATAATA pLKO_005 515 3UTR 100% 15.000 21.000 N SDHC n/a
2 TRCN0000028109 CCCACATTACTATCTACAGTT pLKO.1 186 CDS 100% 4.950 6.930 N SDHC n/a
3 TRCN0000272333 CCGTGGCACTGGTATTGCTTT pLKO_005 238 CDS 100% 4.950 3.960 N LOC642502 n/a
4 TRCN0000272392 ATTGCCTCCGAGCCCACTTTA pLKO_005 60 CDS 100% 13.200 9.240 N LOC642502 n/a
5 TRCN0000272391 CCTCAGCTCTGTATCAGAAAT pLKO_005 83 CDS 100% 13.200 9.240 N LOC642502 n/a
6 TRCN0000028088 GAGCGGTTCTGGAATAAGAAT pLKO.1 140 CDS 100% 5.625 3.938 N SDHC n/a
7 TRCN0000338820 GAGCGGTTCTGGAATAAGAAT pLKO_005 140 CDS 100% 5.625 3.938 N SDHC n/a
8 TRCN0000028038 CCCTCAGCTCTGTATCAGAAA pLKO.1 82 CDS 100% 4.950 2.970 N SDHC n/a
9 TRCN0000338819 CCCTCAGCTCTGTATCAGAAA pLKO_005 82 CDS 100% 4.950 2.970 N SDHC n/a
10 TRCN0000166498 CGCCTGTAATCCCAGTACTTT pLKO.1 10357 3UTR 100% 5.625 2.813 Y MGC13053 n/a
11 TRCN0000008902 CCTCCCAAAGTGTTGGGATTA pLKO.1 4967 3UTR 100% 1.080 0.540 Y GPR83 n/a
12 TRCN0000156315 CCTCCCAAAGTGTTGGGATTA pLKO.1 4967 3UTR 100% 1.080 0.540 Y MYORG n/a
13 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 6907 3UTR 100% 13.200 6.600 Y LIAS n/a
14 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 7071 3UTR 100% 10.800 5.400 Y SMIM11A n/a
15 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 12016 3UTR 100% 5.625 2.813 Y KLHL30 n/a
16 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 12016 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001035511.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01514 pDONR223 100% 55.8% 46.5% None 240_241ins164;344_450del n/a
2 ccsbBroad304_01514 pLX_304 0% 55.8% 46.5% V5 240_241ins164;344_450del n/a
3 TRCN0000474834 CCGAGTCATCCTTGGGCCGCATGT pLX_317 69.4% 55.8% 46.5% V5 240_241ins164;344_450del n/a
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