Transcript: Human NM_001098511.2

Homo sapiens kinesin family member 2A (KIF2A), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
KIF2A (3796)
Length:
4172
CDS:
312..2546

Additional Resources:

NCBI RefSeq record:
NM_001098511.2
NBCI Gene record:
KIF2A (3796)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001098511.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000370431 ATGGTAGTGTTTCAGATATAT pLKO_005 709 CDS 100% 15.000 21.000 N KIF2A n/a
2 TRCN0000108386 CCAAACTATAAGAAGCTAGAA pLKO.1 1368 CDS 100% 4.950 6.930 N KIF2A n/a
3 TRCN0000108389 CTGGTGATGTTCGTCCAATAA pLKO.1 2104 CDS 100% 13.200 9.240 N KIF2A n/a
4 TRCN0000300440 CTGGTGATGTTCGTCCAATAA pLKO_005 2104 CDS 100% 13.200 9.240 N KIF2A n/a
5 TRCN0000304066 TTAACTGAACTGCGGGATAAA pLKO_005 2445 CDS 100% 13.200 9.240 N KIF2A n/a
6 TRCN0000108388 CCTATTGATGAACATAGGATA pLKO.1 963 CDS 100% 0.495 0.347 N KIF2A n/a
7 TRCN0000300439 CCTATTGATGAACATAGGATA pLKO_005 963 CDS 100% 0.495 0.347 N KIF2A n/a
8 TRCN0000108385 GCCATTTGAAAGTTTGGAATT pLKO.1 2616 3UTR 100% 0.000 0.000 N KIF2A n/a
9 TRCN0000300438 GCCATTTGAAAGTTTGGAATT pLKO_005 2616 3UTR 100% 0.000 0.000 N KIF2A n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001098511.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10935 pDONR223 100% 91.2% 91.2% None 1_81del;1645_1758del n/a
2 ccsbBroad304_10935 pLX_304 0% 91.2% 91.2% V5 1_81del;1645_1758del n/a
3 TRCN0000474910 TTTTTTGAAATTTAATGCATTTTA pLX_317 19.3% 91.2% 91.2% V5 1_81del;1645_1758del n/a
Download CSV