Transcript: Human NM_001128930.2

Homo sapiens ectonucleoside triphosphate diphosphohydrolase 4 (ENTPD4), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-06-08
Taxon:
Homo sapiens (human)
Gene:
ENTPD4 (9583)
Length:
5873
CDS:
273..2099

Additional Resources:

NCBI RefSeq record:
NM_001128930.2
NBCI Gene record:
ENTPD4 (9583)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001128930.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000236510 TCGTTTCCTGTCAACTATAAA pLKO_005 1761 CDS 100% 15.000 21.000 N ENTPD4 n/a
2 TRCN0000236512 TGTTGTCATAATCCGAAATAA pLKO_005 422 CDS 100% 15.000 21.000 N ENTPD4 n/a
3 TRCN0000051412 CCTTGGACGATTTGAGCATAT pLKO.1 971 CDS 100% 10.800 15.120 N ENTPD4 n/a
4 TRCN0000051410 CGAAATAAGTATGGGCGACTA pLKO.1 435 CDS 100% 4.050 5.670 N ENTPD4 n/a
5 TRCN0000236511 TACGCCAAATTATGGTCATTA pLKO_005 364 CDS 100% 13.200 9.240 N ENTPD4 n/a
6 TRCN0000236514 TTGGACGATTTGAGCATATTG pLKO_005 973 CDS 100% 13.200 9.240 N ENTPD4 n/a
7 TRCN0000236513 GTCTAGAAGTATTGCGTTTAG pLKO_005 2543 3UTR 100% 10.800 7.560 N ENTPD4 n/a
8 TRCN0000051411 CCCTAGACATTAAAGATGAAA pLKO.1 1357 CDS 100% 5.625 3.938 N ENTPD4 n/a
9 TRCN0000051409 GCCTGGATGTTTGAGGTGTTT pLKO.1 1728 CDS 100% 4.950 3.465 N ENTPD4 n/a
10 TRCN0000051408 CGGGCATTTCAGAATTTGCTA pLKO.1 682 CDS 100% 3.000 2.100 N ENTPD4 n/a
11 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 2247 3UTR 100% 4.950 2.475 Y ERAP2 n/a
12 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 2248 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001128930.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11392 pDONR223 100% 91.3% 85.2% None (many diffs) n/a
2 ccsbBroad304_11392 pLX_304 0% 91.3% 85.2% V5 (many diffs) n/a
3 TRCN0000474975 GGTCCTGAGCATTCGGAGTGCCAC pLX_317 32.7% 91.3% 85.2% V5 (many diffs) n/a
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