Transcript: Mouse NM_001164734.1

Mus musculus membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) (Mpp6), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Mpp6 (56524)
Length:
2222
CDS:
293..1954

Additional Resources:

NCBI RefSeq record:
NM_001164734.1
NBCI Gene record:
Mpp6 (56524)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001164734.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000024305 GCCATCCGTATTCTCGGTATT pLKO.1 668 CDS 100% 10.800 15.120 N Mpp6 n/a
2 TRCN0000024307 GCATACAACCACTACTTTGAT pLKO.1 1826 CDS 100% 5.625 7.875 N Mpp6 n/a
3 TRCN0000024306 GCAGAGGAGATAGACCTAATT pLKO.1 341 CDS 100% 13.200 10.560 N Mpp6 n/a
4 TRCN0000368768 TTCACGTGGGAGATATCATTA pLKO_005 795 CDS 100% 13.200 10.560 N Mpp6 n/a
5 TRCN0000361744 CAGAGATGGAAGCAGATATTA pLKO_005 1509 CDS 100% 15.000 10.500 N Mpp6 n/a
6 TRCN0000361747 GTACTGAATCCTGCTAGATTT pLKO_005 1409 CDS 100% 13.200 9.240 N Mpp6 n/a
7 TRCN0000024308 CCTCTGATTAGTGTGGATGAA pLKO.1 497 CDS 100% 4.950 3.465 N Mpp6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001164734.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000489158 ACGGGAGACCATCTCCGGCAAGCG pLX_317 23.5% 88.2% 95.6% V5 (not translated due to prior stop codon) (many diffs) n/a
2 TRCN0000489366 GCTCAAATGCGGCGGACAGGTGTC pLX_317 21.6% 88.1% 95.4% V5 (many diffs) n/a
3 TRCN0000474714 TCGAAACATACATTCCTTTGAAAG pLX_317 100% 22.4% 1.2% V5 (not translated due to prior stop codon) (many diffs) n/a
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