Construct: ORF TRCN0000489366

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019103.1_s317c1
DNA Barcode:
GCTCAAATGCGGCGGACAGGTGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MPP6 (51678)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489366
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51678 MPP6 membrane palmitoylated prot... NM_001303037.2 99.8% 99.8% 741G>A;1620_1621insG
2 human 51678 MPP6 membrane palmitoylated prot... NM_016447.4 99.8% 99.8% 741G>A;1620_1621insG
3 human 51678 MPP6 membrane palmitoylated prot... XM_006715738.3 99.8% 99.8% 741G>A;1620_1621insG
4 human 51678 MPP6 membrane palmitoylated prot... XM_006715739.3 99.8% 99.8% 741G>A;1620_1621insG
5 human 51678 MPP6 membrane palmitoylated prot... XM_006715740.3 99.8% 99.8% 741G>A;1620_1621insG
6 human 51678 MPP6 membrane palmitoylated prot... XM_011515425.2 99.8% 99.8% 741G>A;1620_1621insG
7 human 51678 MPP6 membrane palmitoylated prot... XM_017012315.1 99.8% 99.8% 741G>A;1620_1621insG
8 human 51678 MPP6 membrane palmitoylated prot... XM_017012316.2 99.8% 99.8% 741G>A;1620_1621insG
9 human 51678 MPP6 membrane palmitoylated prot... XM_017012317.1 99.8% 99.8% 741G>A;1620_1621insG
10 human 51678 MPP6 membrane palmitoylated prot... XM_005249775.5 79.1% 79.1% 0_1ins336;405G>A;1284_1285insG
11 mouse 56524 Mpp6 membrane protein, palmitoyl... NM_019939.2 90.4% 97.9% (many diffs)
12 mouse 56524 Mpp6 membrane protein, palmitoyl... NM_001164733.1 88.1% 95.4% (many diffs)
13 mouse 56524 Mpp6 membrane protein, palmitoyl... NM_001164734.1 88.1% 95.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
1695
ORF length:
1623
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catgcagcaa gtcttggaaa accttacgga gctgccctcg tctactggag
121cagaagaaat agacctaatt ttcctcaagg gaattatgga gaatcctatt gtaaaatcac
181ttgctaaggc tcatgagagg ctagaagatt ccaaactaga agctgtcagt gacaataact
241tggaattagt caatgaaatt cttgaagaca tcactcctct aataaatgtg gatgaaaatg
301tggcagaatt ggttggtata ctcaaagaac ctcacttcca gtcactgttg gaggcccatg
361atattgtggc atcaaagtgt tatgattcac ctccatcaag cccagaaatg aataattctt
421ctatcaataa tcagttatta ccagtagatg ccattcgtat tcttggtatt cacaaaagag
481ctggggaacc actgggtgtg acatttaggg ttgaaaataa tgatctggta attgcccgaa
541tcctccatgg gggaatgata gatcgacaag gtctacttca tgtgggagat ataattaaag
601aagtcaatgg ccatgaggtt ggaaataatc caaaggaatt acaagaatta ctgaaaaata
661ttagtggaag tgtcacccta aaaatcttac caagttatag agataccatt actcctcaac
721aggtatttgt gaagtgtcat tttgattata atccatacaa tgacaaccta ataccttgca
781aagaagcagg attgaagttt tccaaaggag aaattcttca gattgtaaat agagaagatc
841caaattggtg gcaggctagc catgtaaaag agggaggaag cgctggtctc attccaagcc
901agttcctgga agagaagaga aaggcatttg ttagaagaga ctgggacaat tcaggacctt
961tttgtggaac tataagtagc aaaaaaaaga aaaagatgat gtatctcaca accagaaatg
1021cagaatttga tcgtcatgaa atccagatat atgaggaggt agccaaaatg cctcccttcc
1081agagaaaaac attagtattg ataggagctc aaggtgtagg ccgaagaagc ttgaaaaaca
1141ggttcatagt attgaatccc actagatttg gaactacggt gccatttact tcacggaaac
1201caagggaaga tgaaaaagat ggccaggcat ataagtttgt gtcacgatct gagatggaag
1261cagatattaa agctggaaag tatttggaac atggggaata tgaaggaaat ctctatggaa
1321ccaaaattga ttctattctt gaggttGTCC AAACTGGACG GACTTGCATT CTGGATGTCA
1381ACCCACAAGC ACTGAAAGTA TTGAGGACAT CAGAGTTTAT GCCCTATGTG GTATTTATTG
1441CGGCTCCGGA GCTAGAGACG TTACGTGCCA TGCACAAGGC TGTGGTGGAT GCAGGAATCA
1501CTACCAAGCT TCTGACCGAC TCTGACTTGA AGAAAACAGT GGATGAAAGT GCACGGATTC
1561AGAGAGCATA CAACCACTAT TTTGATTTGA TCATCATAAA TGATAATCTA GACAAAGCCT
1621TTGAAAAACT GCAAACTGCC ATAGAGAAAC TGAGAATGGA ACCACAGTGG GTCCCAATCA
1681GCTGGGTTTA CGACCCAGCT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1741ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1801CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAGCT CAAATGCGGC GGACAGGTGT
1861CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)

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