Construct: ORF TRCN0000474068
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013737.1_s317c1
- Derived from:
- ccsbBroadEn_02632
- DNA Barcode:
- CCAAGAGTACGCCGTGGATCCAGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTP4A3 (11156)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474068
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | NM_007079.3 | 100% | 100% | |
| 2 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_017012998.2 | 100% | 100% | |
| 3 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | NM_032611.3 | 85.5% | 85.5% | 330_404del |
| 4 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_005250764.2 | 85.5% | 85.5% | 330_404del |
| 5 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_011516803.1 | 85.5% | 85.5% | 330_404del |
| 6 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_011516805.1 | 85.5% | 85.5% | 330_404del |
| 7 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_024447057.1 | 85.5% | 85.5% | 330_404del |
| 8 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_017012999.2 | 83.7% | 83.7% | 30_31ins72 |
| 9 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_006716500.3 | 71.6% | 71.6% | 30_31ins72;258_332del |
| 10 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | NM_001166388.1 | 76.1% | 82% | (many diffs) |
| 11 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | NM_001166389.1 | 76.1% | 82% | (many diffs) |
| 12 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | NM_008975.3 | 76.1% | 82% | (many diffs) |
| 13 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | XM_006520640.3 | 76.1% | 82% | (many diffs) |
| 14 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | XM_006520642.1 | 76.1% | 82% | (many diffs) |
| 15 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | XM_011245523.1 | 76.1% | 82% | (many diffs) |
| 16 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | NM_001166390.1 | 64.5% | 64.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 534
- ORF length:
- 444
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGCTCGGAT GAACCGCCCG GCCCCGGTGG 121 AGGTGAGCTA CAAACACATG CGCTTCCTCA TCACCCACAA CCCCACCAAC GCCACGCTCA 181 GCACCTTCAT TGAGGACCTG AAGAAGTACG GGGCTACCAC TGTGGTGCGT GTGTGTGAAG 241 TGACCTATGA CAAAACGCCG CTGGAGAAGG ATGGCATCAC CGTTGTGGAC TGGCCGTTTG 301 ACGATGGGGC GCCCCCGCCC GGCAAGGTAG TGGAAGACTG GCTGAGCCTG GTGAAGGCCA 361 AGTTCTGTGA GGCCCCCGGC AGCTGCGTGG CTGTGCACTG CGTGGCGGGC CTGGGCCGGA 421 AGCGCCGCGG AGCCATCAAC AGCAAGCAGC TCACCTACCT GGAGAAATAC CGGCCCAAAC 481 AGAGGCTGCG GTTCAAAGAC CCACACACGC ACAAGACCCG GTGCTGCGTT ATGTACCCAA 541 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 601 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 661 TATCTTGTGG AAAGGACGAC CAAGAGTACG CCGTGGATCC AGGACGCGTT AAGTCgacaa 721 tcaacctctg gattacaaaa tttgtgaaag att