Transcript: Mouse NM_001177833.1

Mus musculus spermine oxidase (Smox), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Smox (228608)
Length:
2280
CDS:
202..1959

Additional Resources:

NCBI RefSeq record:
NM_001177833.1
NBCI Gene record:
Smox (228608)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001177833.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000421960 TTTATCCGCCAGAGCGCTATG pLKO_005 1442 CDS 100% 6.000 8.400 N Smox n/a
2 TRCN0000076714 CGGCATGGTAAACCAGTCAAT pLKO.1 664 CDS 100% 4.950 6.930 N Smox n/a
3 TRCN0000429221 AGAAGGTGCGGAATCGCATCA pLKO_005 722 CDS 100% 4.050 5.670 N Smox n/a
4 TRCN0000076715 CCTATCTATCAACTAGCAGAA pLKO.1 463 CDS 100% 4.050 5.670 N Smox n/a
5 TRCN0000045980 CGATTTATACAACGAGGTCTA pLKO.1 621 CDS 100% 4.050 5.670 N SMOX n/a
6 TRCN0000076713 CCGTGCTCTTAATTTCCTAAT pLKO.1 2033 3UTR 100% 10.800 8.640 N Smox n/a
7 TRCN0000076717 ACCACGTGATTGTGACCGTTT pLKO.1 1178 CDS 100% 4.050 3.240 N Smox n/a
8 TRCN0000359567 ATTTATACAACGAGGTCTATA pLKO_005 623 CDS 100% 13.200 9.240 N SMOX n/a
9 TRCN0000421741 ATTTATACAACGAGGTCTATA pLKO_005 623 CDS 100% 13.200 9.240 N Smox n/a
10 TRCN0000442182 CACAGAGATGCTTCGACAGTT pLKO_005 1545 CDS 100% 4.950 3.465 N Smox n/a
11 TRCN0000427086 CCACACACCGCAAGTACTACT pLKO_005 1850 CDS 100% 4.950 3.465 N Smox n/a
12 TRCN0000413980 TAGTCGTGGAGTGCGAGGATT pLKO_005 1139 CDS 100% 4.950 3.465 N Smox n/a
13 TRCN0000076716 CCTTGAATTTGAGGAGCCCTT pLKO.1 1308 CDS 100% 2.160 1.512 N Smox n/a
14 TRCN0000416073 AGGTGTCCTCACTGCCAAATG pLKO_005 1961 3UTR 100% 10.800 6.480 N Smox n/a
15 TRCN0000438586 CTTTGGAGAATGGACGGAGAT pLKO_005 864 CDS 100% 4.050 2.430 N Smox n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001177833.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08385 pDONR223 99.1% 77.6% 82.5% None (many diffs) n/a
2 ccsbBroad304_08385 pLX_304 0% 77.6% 82.5% V5 (not translated due to prior stop codon) (many diffs) n/a
3 ccsbBroadEn_08386 pDONR223 100% 77.6% 82.5% None (many diffs) n/a
4 ccsbBroad304_08386 pLX_304 0% 77.6% 82.5% V5 (many diffs) n/a
5 TRCN0000476984 CTGTCCATAGCTTCTTATCGACTG pLX_317 22% 77.6% 82.5% V5 (many diffs) n/a
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