Transcript: Human NM_001184823.1

Homo sapiens voltage dependent anion channel 2 (VDAC2), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-23
Taxon:
Homo sapiens (human)
Gene:
VDAC2 (7417)
Length:
1447
CDS:
85..969

Additional Resources:

NCBI RefSeq record:
NM_001184823.1
NBCI Gene record:
VDAC2 (7417)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001184823.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000150602 GATCTCAACAAGAGCTGTATT pLKO.1 1083 3UTR 100% 13.200 18.480 N VDAC2 n/a
2 TRCN0000376433 TCTAGTTGGTTATCTAGTTAC pLKO_005 1137 3UTR 100% 10.800 15.120 N VDAC2 n/a
3 TRCN0000151179 GCAGCTAAATATCAGTTGGAT pLKO.1 781 CDS 100% 3.000 4.200 N VDAC2 n/a
4 TRCN0000369747 GCAGTCACCTATACATTATTT pLKO_005 1173 3UTR 100% 15.000 12.000 N VDAC2 n/a
5 TRCN0000364814 TCAACGTCCGGTTCATCTAAT pLKO_005 241 CDS 100% 13.200 10.560 N VDAC2 n/a
6 TRCN0000369674 GCAAAGCTGCCAGAGATATTT pLKO_005 149 CDS 100% 15.000 10.500 N VDAC2 n/a
7 TRCN0000364874 ACAGAATTTGGAGGATCAATT pLKO_005 679 CDS 100% 13.200 9.240 N VDAC2 n/a
8 TRCN0000151244 GCTACCCACCAATAATGAAAT pLKO.1 1217 3UTR 100% 13.200 9.240 N VDAC2 n/a
9 TRCN0000364813 TCGCAATTGAAGACCAGATTT pLKO_005 371 CDS 100% 13.200 9.240 N VDAC2 n/a
10 TRCN0000369746 GCTTAATTGGAGTAGGCTATA pLKO_005 839 CDS 100% 10.800 7.560 N VDAC2 n/a
11 TRCN0000153706 CCTTTGACAGTGCCAAATCAA pLKO.1 584 CDS 100% 5.625 3.938 N VDAC2 n/a
12 TRCN0000153654 CCAGCTACACACTAATGTCAA pLKO.1 651 CDS 100% 4.950 3.465 N VDAC2 n/a
13 TRCN0000158154 CCACTGCTTCCATTTCTGCAA pLKO.1 803 CDS 100% 2.640 1.848 N VDAC2 n/a
14 TRCN0000152557 GCTGAAAGAAACCTTTGGGAA pLKO.1 974 3UTR 100% 2.640 1.848 N VDAC2 n/a
15 TRCN0000376432 CCCTGGAGTTGGAGGCTTAAT pLKO_005 950 CDS 100% 13.200 7.920 N VDAC2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001184823.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01765 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01765 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000473187 TTATCACACTCCAAAGTGCATAGA pLX_317 9.2% 100% 100% V5 n/a
4 ccsbBroadEn_15619 pDONR223 0% 96.2% 96.2% None 1_33del n/a
5 ccsbBroad304_15619 pLX_304 0% 96.2% 96.2% V5 1_33del n/a
6 TRCN0000481484 ATTGATATTTCACTACGCATATTT pLX_317 56.2% 96.2% 96.2% V5 1_33del n/a
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