Transcript: Mouse NM_001197082.1

Mus musculus regulator of chromosome condensation 1 (Rcc1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Rcc1 (100088)
Length:
2332
CDS:
115..1419

Additional Resources:

NCBI RefSeq record:
NM_001197082.1
NBCI Gene record:
Rcc1 (100088)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001197082.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000106014 GCACACGGTCTTACTAGTTAA pLKO.1 1380 CDS 100% 0.000 0.000 N Rcc1 n/a
2 TRCN0000288066 GCACACGGTCTTACTAGTTAA pLKO_005 1380 CDS 100% 0.000 0.000 N Rcc1 n/a
3 TRCN0000106012 CCTGAATTATTTGCCAACCGA pLKO.1 775 CDS 100% 0.750 0.600 N Rcc1 n/a
4 TRCN0000295399 TGCCTTCTGTGGCGCCTATTT pLKO_005 885 CDS 100% 13.200 9.240 N Rcc1 n/a
5 TRCN0000106010 CGAGCCTCTTTCTGTTCCTAA pLKO.1 1817 3UTR 100% 4.950 3.465 N Rcc1 n/a
6 TRCN0000288143 CGAGCCTCTTTCTGTTCCTAA pLKO_005 1817 3UTR 100% 4.950 3.465 N Rcc1 n/a
7 TRCN0000106013 CTTCAGTCGAAGGCTCAGAAA pLKO.1 461 CDS 100% 4.950 3.465 N Rcc1 n/a
8 TRCN0000288141 CTTCAGTCGAAGGCTCAGAAA pLKO_005 461 CDS 100% 4.950 3.465 N Rcc1 n/a
9 TRCN0000106011 CCTGTGGAAATGACTGGCAAA pLKO.1 1315 CDS 100% 4.050 2.430 N Rcc1 n/a
10 TRCN0000288142 CCTGTGGAAATGACTGGCAAA pLKO_005 1315 CDS 100% 4.050 2.430 N Rcc1 n/a
11 TRCN0000037723 CCTCTCCAACTATCACCAGTA pLKO.1 948 CDS 100% 4.050 2.430 N PIP4K2C n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001197082.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00300 pDONR223 100% 86.5% 91% None (many diffs) n/a
2 ccsbBroad304_00300 pLX_304 0% 86.5% 91% V5 (many diffs) n/a
3 TRCN0000470774 TGGTAATAGCTAAACAGCCAAAAC pLX_317 35.6% 86.5% 91% V5 (many diffs) n/a
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