Transcript: Human NM_001199056.2

Homo sapiens cell death inducing p53 target 1 (CDIP1), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
CDIP1 (29965)
Length:
2469
CDS:
177..566

Additional Resources:

NCBI RefSeq record:
NM_001199056.2
NBCI Gene record:
CDIP1 (29965)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001199056.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000414553 AGGTTCAGTCCAGACTCTTTC pLKO_005 895 3UTR 100% 10.800 7.560 N CDIP1 n/a
2 TRCN0000444288 TGCTGCAGGGAGAGATCTTTG pLKO_005 319 CDS 100% 10.800 7.560 N CDIP1 n/a
3 TRCN0000430722 AGCCTACATCTACACGTACAA pLKO_005 533 CDS 100% 4.950 3.465 N CDIP1 n/a
4 TRCN0000438153 CACGTAGGACAGGGTCACAAA pLKO_005 1032 3UTR 100% 4.950 3.465 N CDIP1 n/a
5 TRCN0000108058 CTACGAGATTGGCTTGATGAA pLKO.1 401 CDS 100% 4.950 3.465 N CDIP1 n/a
6 TRCN0000413429 TGTTGCTTCATGGGATGTGAT pLKO_005 441 CDS 100% 4.950 3.465 N CDIP1 n/a
7 TRCN0000108055 GCCCTGTCTTTATTTCCTGAA pLKO.1 1645 3UTR 100% 4.050 2.835 N CDIP1 n/a
8 TRCN0000238043 AGGCCATCACCACCAAGATCT pLKO_005 379 CDS 100% 4.950 2.970 N Cdip1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001199056.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03119 pDONR223 100% 62% 62% None 118_119ins237 n/a
2 ccsbBroad304_03119 pLX_304 0% 62% 62% V5 118_119ins237 n/a
3 TRCN0000471976 GTCTTGGCCGAGATCGTTTGCTGC pLX_317 61.9% 62% 62% V5 (not translated due to prior stop codon) 118_119ins237 n/a
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