Transcript: Mouse NM_001285911.1

Mus musculus guanine nucleotide binding protein (G protein), gamma 2 (Gng2), transcript variant 6, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Gng2 (14702)
Length:
3653
CDS:
190..405

Additional Resources:

NCBI RefSeq record:
NM_001285911.1
NBCI Gene record:
Gng2 (14702)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001285911.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000037055 GCTGACTTGATGGCCTACTGT pLKO.1 292 CDS 100% 3.000 4.200 N Gng2 n/a
2 TRCN0000326410 GCTGACTTGATGGCCTACTGT pLKO_005 292 CDS 100% 3.000 4.200 N Gng2 n/a
3 TRCN0000037054 CGACAGGATAAAGGTGTCCAA pLKO.1 264 CDS 100% 2.640 2.112 N Gng2 n/a
4 TRCN0000139476 CGACAGGATAAAGGTGTCCAA pLKO.1 264 CDS 100% 2.640 2.112 N GNG2 n/a
5 TRCN0000326411 CGACAGGATAAAGGTGTCCAA pLKO_005 264 CDS 100% 2.640 2.112 N Gng2 n/a
6 TRCN0000037058 CAAGCCAGGAAGCTGGTAGAA pLKO.1 220 CDS 100% 4.950 3.465 N Gng2 n/a
7 TRCN0000037057 CCAAGGAAGACCCTCTGCTGA pLKO.1 323 CDS 100% 0.880 0.616 N Gng2 n/a
8 TRCN0000326412 CCAAGGAAGACCCTCTGCTGA pLKO_005 323 CDS 100% 0.880 0.616 N Gng2 n/a
9 TRCN0000037056 AGCTGGTAGAACAGCTGAAGA pLKO.1 230 CDS 100% 0.495 0.347 N Gng2 n/a
10 TRCN0000326413 AGCTGGTAGAACAGCTGAAGA pLKO_005 230 CDS 100% 0.495 0.347 N Gng2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001285911.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03408 pDONR223 100% 92.4% 100% None (many diffs) n/a
2 ccsbBroad304_03408 pLX_304 0% 92.4% 100% V5 (many diffs) n/a
3 TRCN0000466693 GGACAATCAATGTACAAGGCACCC pLX_317 100% 92.4% 100% V5 (many diffs) n/a
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