Transcript: Human NM_001303513.2

Homo sapiens PDZ domain containing 4 (PDZD4), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
PDZD4 (57595)
Length:
4347
CDS:
1139..3160

Additional Resources:

NCBI RefSeq record:
NM_001303513.2
NBCI Gene record:
PDZD4 (57595)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001303513.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000425729 TAACGGTGTAGACGTCCAGAA pLKO_005 1402 CDS 100% 4.050 5.670 N PDZD4 n/a
2 TRCN0000161219 GAGGTAAATCCCAACAGCATT pLKO.1 1334 CDS 100% 4.950 3.960 N PDZD4 n/a
3 TRCN0000427341 CCAATCAGCCATGAGTATTAT pLKO_005 1151 CDS 100% 15.000 10.500 N PDZD4 n/a
4 TRCN0000164167 CCCTTTCTGTGCTTGCCAATA pLKO.1 3658 3UTR 100% 10.800 7.560 N PDZD4 n/a
5 TRCN0000160309 CTGCAGTTATTTGTAGACAAA pLKO.1 3610 3UTR 100% 4.950 3.465 N PDZD4 n/a
6 TRCN0000161567 GATGACTTTGGCTCTGAGAAT pLKO.1 1544 CDS 100% 4.950 3.465 N PDZD4 n/a
7 TRCN0000161618 GCATTTATGTCGGAGAGGTAA pLKO.1 1320 CDS 100% 4.950 3.465 N PDZD4 n/a
8 TRCN0000163713 GCAGTACAAAGTGATGCTGCA pLKO.1 628 5UTR 100% 2.160 1.512 N PDZD4 n/a
9 TRCN0000420744 ATTCAAGTGCCGCAACATACT pLKO_005 2080 CDS 100% 4.950 2.970 N PDZD4 n/a
10 TRCN0000160954 GATGACTTCCTGGATGACTTT pLKO.1 1532 CDS 100% 4.950 2.970 N PDZD4 n/a
11 TRCN0000099139 GAGCAGTACAAAGTGATGCTT pLKO.1 626 5UTR 100% 3.000 2.100 N Pdzd4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001303513.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12372 pDONR223 100% 86.6% 86.4% None 1_1delAins308;5_6delCC;8_9insT n/a
2 ccsbBroad304_12372 pLX_304 0% 86.6% 86.4% V5 1_1delAins308;5_6delCC;8_9insT n/a
3 TRCN0000469818 AAGTAATACTGAATAGACTAACGC pLX_317 21.2% 86.6% 86.4% V5 1_1delAins308;5_6delCC;8_9insT n/a
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