Transcript: Human NM_001303514.1

Homo sapiens PDZ domain containing 4 (PDZD4), transcript variant 4, mRNA.

Source:
NCBI, updated 2018-06-30
Taxon:
Homo sapiens (human)
Gene:
PDZD4 (57595)
Length:
3455
CDS:
270..2252

Additional Resources:

NCBI RefSeq record:
NM_001303514.1
NBCI Gene record:
PDZD4 (57595)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001303514.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000425729 TAACGGTGTAGACGTCCAGAA pLKO_005 494 CDS 100% 4.050 5.670 N PDZD4 n/a
2 TRCN0000161219 GAGGTAAATCCCAACAGCATT pLKO.1 426 CDS 100% 4.950 3.960 N PDZD4 n/a
3 TRCN0000164167 CCCTTTCTGTGCTTGCCAATA pLKO.1 2750 3UTR 100% 10.800 7.560 N PDZD4 n/a
4 TRCN0000160309 CTGCAGTTATTTGTAGACAAA pLKO.1 2702 3UTR 100% 4.950 3.465 N PDZD4 n/a
5 TRCN0000161567 GATGACTTTGGCTCTGAGAAT pLKO.1 636 CDS 100% 4.950 3.465 N PDZD4 n/a
6 TRCN0000161618 GCATTTATGTCGGAGAGGTAA pLKO.1 412 CDS 100% 4.950 3.465 N PDZD4 n/a
7 TRCN0000163713 GCAGTACAAAGTGATGCTGCA pLKO.1 308 CDS 100% 2.160 1.512 N PDZD4 n/a
8 TRCN0000420744 ATTCAAGTGCCGCAACATACT pLKO_005 1172 CDS 100% 4.950 2.970 N PDZD4 n/a
9 TRCN0000160954 GATGACTTCCTGGATGACTTT pLKO.1 624 CDS 100% 4.950 2.970 N PDZD4 n/a
10 TRCN0000099139 GAGCAGTACAAAGTGATGCTT pLKO.1 306 CDS 100% 3.000 2.100 N Pdzd4 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001303514.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12372 pDONR223 100% 85.1% 85.1% None 58_59ins345 n/a
2 ccsbBroad304_12372 pLX_304 0% 85.1% 85.1% V5 58_59ins345 n/a
3 TRCN0000469818 AAGTAATACTGAATAGACTAACGC pLX_317 21.2% 85.1% 85.1% V5 58_59ins345 n/a
Download CSV