Transcript: Human NM_001318888.2

Homo sapiens high mobility group nucleosomal binding domain 3 (HMGN3), transcript variant 9, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
HMGN3 (9324)
Length:
751
CDS:
123..308

Additional Resources:

NCBI RefSeq record:
NM_001318888.2
NBCI Gene record:
HMGN3 (9324)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001318888.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000359140 TGTAGATAACGAGGGAGAATG pLKO_005 287 CDS 100% 10.800 15.120 N HMGN3 n/a
2 TRCN0000019106 CTGTAGATAACGAGGGAGAAT pLKO.1 286 CDS 100% 4.950 6.930 N HMGN3 n/a
3 TRCN0000359139 GCATTCCATGCACTTGCTTTA pLKO_005 543 3UTR 100% 10.800 8.640 N HMGN3 n/a
4 TRCN0000019104 TCTGCCAGATTGTCAGCGAAA pLKO.1 201 CDS 100% 4.050 3.240 N HMGN3 n/a
5 TRCN0000275883 TCTGCCAGATTGTCAGCGAAA pLKO_005 201 CDS 100% 4.050 3.240 N HMGN3 n/a
6 TRCN0000285453 AGCTGTGTGTAAGATTGATTC pLKO_005 521 3UTR 100% 10.800 7.560 N HMGN3 n/a
7 TRCN0000275882 ACTAAACAGGAGCCCACAAGA pLKO_005 177 CDS 100% 4.950 3.465 N HMGN3 n/a
8 TRCN0000019108 GAGGGCAAAGATGGATCCAAA pLKO.1 153 CDS 100% 4.950 3.465 N HMGN3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001318888.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02139 pDONR223 100% 69.8% 63.6% None (many diffs) n/a
2 ccsbBroad304_02139 pLX_304 0% 69.8% 63.6% V5 (many diffs) n/a
3 TRCN0000466191 GATACAAGTAGCGGCCGGCTATGC pLX_317 100% 69.8% 63.6% V5 (many diffs) n/a
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