Transcript: Human NM_001323316.2

Homo sapiens transglutaminase 2 (TGM2), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-09-03
Taxon:
Homo sapiens (human)
Gene:
TGM2 (7052)
Length:
5042
CDS:
145..2208

Additional Resources:

NCBI RefSeq record:
NM_001323316.2
NBCI Gene record:
TGM2 (7052)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001323316.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000000241 ACAGCAACCTTCTCATCGAGT pLKO.1 1067 CDS 100% 2.640 3.696 N TGM2 n/a
2 TRCN0000272817 ACAGCAACCTTCTCATCGAGT pLKO_005 1067 CDS 100% 2.640 3.696 N TGM2 n/a
3 TRCN0000000243 TGAGAAATACCGTGACTGCCT pLKO.1 1788 CDS 100% 0.660 0.924 N TGM2 n/a
4 TRCN0000284849 TGAGAAATACCGTGACTGCCT pLKO_005 1788 CDS 100% 0.660 0.924 N TGM2 n/a
5 TRCN0000000239 CCACCCACCATATTGTTTGAT pLKO.1 2528 3UTR 100% 5.625 4.500 N TGM2 n/a
6 TRCN0000272816 CCACCCACCATATTGTTTGAT pLKO_005 2528 3UTR 100% 5.625 4.500 N TGM2 n/a
7 TRCN0000272760 TATCACCCACACCTACAAATA pLKO_005 1458 CDS 100% 13.200 9.240 N TGM2 n/a
8 TRCN0000284851 TTGTGCTGGGCCACTTCATTT pLKO_005 533 CDS 100% 13.200 9.240 N TGM2 n/a
9 TRCN0000000240 AGAAATACCGTGACTGCCTTA pLKO.1 1790 CDS 100% 4.050 2.835 N TGM2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001323316.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07061 pDONR223 100% 78.6% 78.2% None (many diffs) n/a
2 ccsbBroad304_07061 pLX_304 0% 78.6% 78.2% V5 (many diffs) n/a
3 TRCN0000467099 TGGTAACCACAAGTGCTACCTGCA pLX_317 23.8% 78.6% 78.2% V5 (many diffs) n/a
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