Transcript: Human NM_001348660.2

Homo sapiens chromosome 16 open reading frame 87 (C16orf87), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
C16orf87 (388272)
Length:
6662
CDS:
32..313

Additional Resources:

NCBI RefSeq record:
NM_001348660.2
NBCI Gene record:
C16orf87 (388272)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001348660.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000133888 CATGTCCTTGTGGTTACATAT pLKO.1 117 CDS 100% 13.200 9.240 N C16orf87 n/a
2 TRCN0000134332 GCATTCTGACTGCATCAATAA pLKO.1 391 3UTR 100% 13.200 9.240 N C16orf87 n/a
3 TRCN0000135521 GCTGGATGGATGTTAAAGGAT pLKO.1 590 3UTR 100% 3.000 2.100 N C16orf87 n/a
4 TRCN0000134079 GTAAATCATGTCCTTGTGGTT pLKO.1 111 CDS 100% 2.640 1.848 N C16orf87 n/a
5 TRCN0000168774 GAGATGGAGTTTCACCATGTT pLKO.1 4924 3UTR 100% 4.950 2.475 Y LOC400464 n/a
6 TRCN0000008902 CCTCCCAAAGTGTTGGGATTA pLKO.1 4735 3UTR 100% 1.080 0.540 Y GPR83 n/a
7 TRCN0000156315 CCTCCCAAAGTGTTGGGATTA pLKO.1 4735 3UTR 100% 1.080 0.540 Y MYORG n/a
8 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1991 3UTR 100% 5.625 2.813 Y KLHL30 n/a
9 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1991 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001348660.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05574 pDONR223 100% 60.3% 60.3% None 161_162ins183 n/a
2 ccsbBroad304_05574 pLX_304 0% 60.3% 60.3% V5 161_162ins183 n/a
3 TRCN0000492013 GATTTCCCTGGCAGTAGGAAGCGC pLX_317 91% 60.3% 60.3% V5 161_162ins183 n/a
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