Transcript: Human NM_001349025.2

Homo sapiens NME/NM23 family member 9 (NME9), transcript variant 8, mRNA.

Source:
NCBI, updated 2019-09-18
Taxon:
Homo sapiens (human)
Gene:
NME9 (347736)
Length:
2033
CDS:
517..1392

Additional Resources:

NCBI RefSeq record:
NM_001349025.2
NBCI Gene record:
NME9 (347736)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

Clone ID Target Seq Vector PAM Seq Cut Position Cut % of CDS Length Exon On Target Score[?] Other Matching Genes Orig. Target Gene[?] Notes Addgene[?]
1 BRDN0001148486 AATCTCATCAGTCTTTCCAT pXPR_003 GGG 400 46% 6 0.5467 NME9 NME9 76836
2 BRDN0001144954 GATGTCCTCGAAAAGTACAG pXPR_003 AGG 230 26% 4 0.4476 NME9 NME9 76837
3 BRDN0001149064 CTGGTACATCACATGTGCAG pXPR_003 TGG 551 63% 8 0.0961 NME9 NME9 76835
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shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001349025.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000359570 TGTACCTTGGCCATCATTAAA pLKO_005 877 CDS 100% 15.000 21.000 N NME9 n/a
2 TRCN0000064178 CGGCACAGAAATGCCCTTCAA pLKO.1 1206 CDS 100% 4.950 3.960 N NME9 n/a
3 TRCN0000064179 CTGGGTTTGAAATTCTAACAA pLKO.1 953 CDS 100% 5.625 3.938 N NME9 n/a
4 TRCN0000064180 GCATTTGAGAAGCTGGTACAT pLKO.1 1039 CDS 100% 4.950 3.465 N NME9 n/a
5 TRCN0000064181 GATCGTCTTGATGTCCTCGAA pLKO.1 721 CDS 100% 2.640 1.848 N NME9 n/a
6 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 1547 3UTR 100% 4.950 2.475 Y CFLAR n/a
7 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 1547 3UTR 100% 4.950 2.475 Y C19orf31 n/a
8 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 1625 3UTR 100% 4.950 2.475 Y ORAI2 n/a
9 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 1622 3UTR 100% 4.950 2.475 Y LOC339059 n/a
10 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 1545 3UTR 100% 4.950 2.475 Y ERN2 n/a
11 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 1545 3UTR 100% 4.950 2.475 Y P3H4 n/a
12 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 1545 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001349025.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.