Transcript: Human NM_001363685.2

Homo sapiens MORN repeat containing 3 (MORN3), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
MORN3 (283385)
Length:
3727
CDS:
96..818

Additional Resources:

NCBI RefSeq record:
NM_001363685.2
NBCI Gene record:
MORN3 (283385)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001363685.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000150568 GTGATAAGAAATCGGGTTATG pLKO.1 385 CDS 100% 10.800 15.120 N MORN3 n/a
2 TRCN0000155215 GCTGTGAATGGCGACTACTAT pLKO.1 189 CDS 100% 5.625 7.875 N MORN3 n/a
3 TRCN0000154937 GCTGGTGGAAAGGTGATAAGA pLKO.1 373 CDS 100% 5.625 3.938 N MORN3 n/a
4 TRCN0000154759 GAAAGTGCAGGAGAGTCTACT pLKO.1 349 CDS 100% 4.950 3.465 N MORN3 n/a
5 TRCN0000153394 GAAGAAGAAAGGAGCCATCTA pLKO.1 260 CDS 100% 4.950 3.465 N MORN3 n/a
6 TRCN0000154522 GACAACGTGAAACACGGGAAA pLKO.1 225 CDS 100% 4.050 2.835 N MORN3 n/a
7 TRCN0000154356 CAGGTCTGGAAGAAGAAAGGA pLKO.1 252 CDS 100% 3.000 2.100 N MORN3 n/a
8 TRCN0000155151 GAAACACGGGAAAGGAACACA pLKO.1 233 CDS 100% 3.000 2.100 N MORN3 n/a
9 TRCN0000153733 CAAGGAGTATTATGAGGGTGA pLKO.1 425 CDS 100% 2.160 1.512 N MORN3 n/a
10 TRCN0000156222 CCCAAGGAGTATTATGAGGGT pLKO.1 423 CDS 100% 0.660 0.462 N MORN3 n/a
11 TRCN0000155026 GAGTGGAAGGACAACGTGAAA pLKO.1 216 CDS 100% 4.950 2.970 N MORN3 n/a
12 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 3318 3UTR 100% 4.950 2.475 Y ORAI2 n/a
13 TRCN0000165534 GAGACAGGGTTTCACCATGTT pLKO.1 2107 3UTR 100% 4.950 2.475 Y n/a
14 TRCN0000363058 TTCGGACCCAAGGAGTATTAC pLKO_005 417 CDS 100% 13.200 10.560 N Morn3 n/a
15 TRCN0000136653 GCCTGACCAACATGGTGAAAT pLKO.1 3308 3UTR 100% 13.200 6.600 Y IQCC n/a
16 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 2646 3UTR 100% 10.800 5.400 Y SMIM11A n/a
17 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 2178 3UTR 100% 5.625 2.813 Y KLHL30 n/a
18 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 3315 3UTR 100% 4.950 2.475 Y LOC339059 n/a
19 TRCN0000172742 GAGACAGAGTCTTGCTCTGTT pLKO.1 1945 3UTR 100% 0.495 0.248 Y C11orf44 n/a
20 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 2178 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001363685.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09942 pDONR223 100% 99.8% 99.5% None 127A>G n/a
2 ccsbBroad304_09942 pLX_304 0% 99.8% 99.5% V5 127A>G n/a
3 TRCN0000465577 TAGCCTGACCTATTGACCCCCAAT pLX_317 55.2% 99.8% 99.5% V5 127A>G n/a
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