Transcript: Human NM_001367581.1

Homo sapiens cytohesin 3 (CYTH3), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
CYTH3 (9265)
Length:
4705
CDS:
842..1540

Additional Resources:

NCBI RefSeq record:
NM_001367581.1
NBCI Gene record:
CYTH3 (9265)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001367581.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000183827 CCTGGTTCATATTTGAGTTTA pLKO.1 4213 3UTR 100% 13.200 9.240 N CYTH3 n/a
2 TRCN0000414135 GCCTAAATAAGACCGTCATTG pLKO_005 446 5UTR 100% 10.800 7.560 N CYTH3 n/a
3 TRCN0000421473 TGATGACAGAGATCGACAATC pLKO_005 260 5UTR 100% 10.800 7.560 N CYTH3 n/a
4 TRCN0000179924 CCTGAAGACCTCTCATTAGAA pLKO.1 154 5UTR 100% 5.625 3.938 N CYTH3 n/a
5 TRCN0000146607 CCCTGGTTCATATTTGAGTTT pLKO.1 4212 3UTR 100% 4.950 3.465 N CYTH3 n/a
6 TRCN0000179183 GATGACATTGAGAGGCTGAAA pLKO.1 223 5UTR 100% 4.950 3.465 N CYTH3 n/a
7 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 503 5UTR 100% 4.950 2.475 Y CFLAR n/a
8 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 503 5UTR 100% 4.950 2.475 Y C19orf31 n/a
9 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 501 5UTR 100% 4.950 2.475 Y ERN2 n/a
10 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 501 5UTR 100% 4.950 2.475 Y P3H4 n/a
11 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 501 5UTR 100% 4.950 2.475 Y P3H4 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001367581.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15663 pDONR223 0% 77% 77.1% None 1_159del;531T>G n/a
2 ccsbBroad304_15663 pLX_304 0% 77% 77.1% V5 1_159del;531T>G n/a
3 TRCN0000467209 ATCGCCCAGGGTACGTTCCTAGCC pLX_317 8% 77% 77.1% V5 1_159del;531T>G n/a
Download CSV