Transcript: Human NM_001369921.1

Homo sapiens activating signal cointegrator 1 complex subunit 2 (ASCC2), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-06-09
Taxon:
Homo sapiens (human)
Gene:
ASCC2 (84164)
Length:
2926
CDS:
251..2524

Additional Resources:

NCBI RefSeq record:
NM_001369921.1
NBCI Gene record:
ASCC2 (84164)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001369921.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000247898 TGGCCTTGCCTCACGATAAAT pLKO_005 459 CDS 100% 15.000 12.000 N Ascc2 n/a
2 TRCN0000073317 CCGCAACCTAGACAGAGAAAT pLKO.1 1804 CDS 100% 13.200 10.560 N ASCC2 n/a
3 TRCN0000427318 TGATACCTGCACCACACTTTG pLKO_005 1000 CDS 100% 10.800 8.640 N ASCC2 n/a
4 TRCN0000247896 GCAGAAGGCAGACCGGTATTT pLKO_005 340 CDS 100% 13.200 9.240 N Ascc2 n/a
5 TRCN0000429529 CGAAGCAGCAATTCCCGAAAT pLKO_005 1099 CDS 100% 10.800 7.560 N ASCC2 n/a
6 TRCN0000222587 GCAGAACACACAGTGCCTTAT pLKO.1 2701 3UTR 100% 10.800 7.560 N ASCC2 n/a
7 TRCN0000073316 CCACTGCTCCAGAAGATGATA pLKO.1 770 CDS 100% 5.625 3.938 N ASCC2 n/a
8 TRCN0000073315 CGATGACACATACGATGGCAA pLKO.1 2098 CDS 100% 2.640 1.848 N ASCC2 n/a
9 TRCN0000073314 GCAATTAAGAAGAGGAGGCTT pLKO.1 1127 CDS 100% 2.640 1.848 N ASCC2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001369921.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04337 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04337 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000476910 CTAGCCAATTTGCCAAATGCCACC pLX_317 8.3% 100% 100% V5 n/a
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