Transcript: Human NM_001702.3

Homo sapiens adhesion G protein-coupled receptor B1 (ADGRB1), mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
ADGRB1 (575)
Length:
6020
CDS:
676..5430

Additional Resources:

NCBI RefSeq record:
NM_001702.3
NBCI Gene record:
ADGRB1 (575)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001702.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000008113 GCGTTCTGTCATCCTCATCAA pLKO.1 3612 CDS 100% 4.950 6.930 N ADGRB1 n/a
2 TRCN0000225912 CACCCTTGGAGATCGAGTTTG pLKO_005 3272 CDS 100% 10.800 7.560 N LOC100045900 n/a
3 TRCN0000378236 CCGATGAAGCATCCGTGTTTG pLKO_005 3131 CDS 100% 10.800 7.560 N ADGRB1 n/a
4 TRCN0000008115 CCTGGTTCTCAGCATCCATAA pLKO.1 2979 CDS 100% 10.800 7.560 N ADGRB1 n/a
5 TRCN0000356713 CTGGTTCTCAGCATCCATAAG pLKO_005 2980 CDS 100% 10.800 7.560 N ADGRB1 n/a
6 TRCN0000378146 TGTCCGTGTGGAGGTACATTC pLKO_005 3584 CDS 100% 10.800 7.560 N ADGRB1 n/a
7 TRCN0000109534 CGGTATGCAGAACTGGACTTT pLKO.1 5101 CDS 100% 4.950 3.465 N Adgrb1 n/a
8 TRCN0000008116 GCAAACCAAGTTCTGCAACAT pLKO.1 2028 CDS 100% 4.950 3.465 N ADGRB1 n/a
9 TRCN0000008114 GCGCTACACTCTCTACATGAA pLKO.1 909 CDS 100% 4.950 3.465 N ADGRB1 n/a
10 TRCN0000378107 TCGAGTTTGCCCACATGTATA pLKO_005 3284 CDS 100% 13.200 7.920 N ADGRB1 n/a
11 TRCN0000011234 AGAGCCAGATGCAGGACAGGA pLKO.1 5596 3UTR 100% 0.880 0.528 N ADGRB1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001702.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000489832 TCATACGTCGTTGTAGGAGTTGAG pLX_317 7.6% 89.8% 87.8% V5 (many diffs) n/a
2 TRCN0000489318 GCTCGAGGCGATTACGCTCATCTT pLX_317 7.7% 89.8% 87.8% V5 (not translated due to prior stop codon) (many diffs) n/a
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