Transcript: Human NM_001754.4

Homo sapiens RUNX family transcription factor 1 (RUNX1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-03
Taxon:
Homo sapiens (human)
Gene:
RUNX1 (861)
Length:
5967
CDS:
191..1633

Additional Resources:

NCBI RefSeq record:
NM_001754.4
NBCI Gene record:
RUNX1 (861)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001754.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000338428 CTACGATCAGTCCTACCAATA pLKO_005 1030 CDS 100% 10.800 15.120 N RUNX1 n/a
2 TRCN0000013658 GCCTTGAAATACCTGTTTCTT pLKO.1 4836 3UTR 100% 5.625 7.875 N RUNX1 n/a
3 TRCN0000013659 CCTACGATCAGTCCTACCAAT pLKO.1 1029 CDS 100% 4.950 6.930 N RUNX1 n/a
4 TRCN0000013661 CGGTCGAAGTGGAAGAGGGAA pLKO.1 682 CDS 100% 0.880 1.232 N RUNX1 n/a
5 TRCN0000338490 GAACCACTCCACTGCCTTTAA pLKO_005 949 CDS 100% 13.200 9.240 N RUNX1 n/a
6 TRCN0000338492 TCGCCCTGTTTGGCATCTAAT pLKO_005 2091 3UTR 100% 13.200 9.240 N RUNX1 n/a
7 TRCN0000013662 CACAGTGCTTCATGAGAGAAT pLKO.1 231 CDS 100% 4.950 3.465 N RUNX1 n/a
8 TRCN0000013660 CCTCGAAGACATCGGCAGAAA pLKO.1 797 CDS 100% 4.950 3.465 N RUNX1 n/a
9 TRCN0000338489 CCTCGAAGACATCGGCAGAAA pLKO_005 797 CDS 100% 4.950 3.465 N RUNX1 n/a
10 TRCN0000358353 TTCGTACCCACAGTGCTTCAT pLKO_005 223 CDS 100% 4.950 3.465 N RUNX1 n/a
11 TRCN0000338427 GAACCAGGTTGCAAGATTTAA pLKO_005 646 CDS 100% 15.000 9.000 N RUNX1 n/a
12 TRCN0000358352 CTGTGATGGCTGGCAATGATG pLKO_005 582 CDS 100% 4.950 2.970 N RUNX1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001754.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00229 pDONR223 100% 100% 100% None n/a
2 TRCN0000476234 ATTTCTAGGCCACCTCGTTGAGCA pLX_317 15.9% 100% 100% V5 n/a
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